Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   V0410_RS11190 Genome accession   NZ_CP143637
Coordinates   2518739..2519392 (+) Length   217 a.a.
NCBI ID   WP_330747585.1    Uniprot ID   -
Organism   Chryseobacterium sp. CP-77     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2513739..2524392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V0410_RS11175 aceA 2513841..2515121 (-) 1281 WP_330747580.1 isocitrate lyase -
  V0410_RS11180 aceB 2515250..2516824 (-) 1575 WP_330747582.1 malate synthase A -
  V0410_RS11185 - 2516951..2518432 (+) 1482 WP_330747583.1 helix-turn-helix transcriptional regulator -
  V0410_RS11190 comF 2518739..2519392 (+) 654 WP_330747585.1 double zinc ribbon domain-containing protein Machinery gene
  V0410_RS11195 - 2519573..2520259 (+) 687 WP_330747587.1 alpha/beta hydrolase -
  V0410_RS11200 upp 2520260..2520910 (-) 651 WP_062676151.1 uracil phosphoribosyltransferase -
  V0410_RS11205 der 2521073..2522383 (-) 1311 WP_110008006.1 ribosome biogenesis GTPase Der -
  V0410_RS11215 - 2522887..2523129 (-) 243 WP_330747590.1 hypothetical protein -
  V0410_RS11220 - 2523317..2524366 (-) 1050 WP_330747592.1 XRE family transcriptional regulator -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25210.08 Da        Isoelectric Point: 8.0788

>NTDB_id=930120 V0410_RS11190 WP_330747585.1 2518739..2519392(+) (comF) [Chryseobacterium sp. CP-77]
MILDILFPNRCIHCNRIVDPELLVCDLCFSQIHFTHYNYFENNPIKEKCSLFFPVENAFALIQFEKEGLSRQIIHDLKYR
SREKTGKILADWTAERLDFKDNFPDLLVSVPLHPKKLKKRGYNQLHLFTETLSSFYNIPFDHNLIKRNHYSKAQALKDKK
HRLETVNTFSTTKPVTGKHILLIDDVFTTGNTVSSVAWEILNAGDNKVSVLVMAEDV

Nucleotide


Download         Length: 654 bp        

>NTDB_id=930120 V0410_RS11190 WP_330747585.1 2518739..2519392(+) (comF) [Chryseobacterium sp. CP-77]
ATGATATTAGACATATTGTTTCCTAACCGCTGCATTCACTGCAACAGAATCGTCGATCCTGAACTTTTGGTTTGTGATCT
TTGTTTCAGCCAGATTCACTTTACCCATTACAATTATTTTGAAAATAATCCGATTAAGGAAAAATGCAGTTTATTTTTTC
CCGTTGAAAACGCATTCGCTTTAATACAGTTTGAAAAGGAAGGTTTAAGCCGTCAGATTATTCACGATCTGAAATATAGA
AGCAGGGAAAAAACAGGAAAAATCTTAGCCGATTGGACAGCAGAACGACTTGATTTCAAAGATAATTTCCCTGACCTTTT
AGTAAGTGTACCACTTCATCCAAAGAAACTGAAGAAACGGGGATATAACCAGCTTCATTTGTTTACCGAAACATTATCTT
CATTTTATAACATTCCTTTTGATCATAATTTAATCAAACGAAATCATTATTCTAAAGCACAGGCCTTAAAAGACAAGAAA
CACAGGCTGGAAACTGTGAATACATTCTCCACAACCAAGCCTGTTACCGGAAAACATATTCTTTTGATTGATGATGTTTT
CACAACAGGAAATACGGTTTCATCAGTCGCGTGGGAGATTTTAAATGCCGGAGATAATAAAGTAAGTGTTTTGGTGATGG
CTGAGGATGTTTGA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

51.389

99.539

0.512