Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   V2I71_RS18200 Genome accession   NZ_CP143575
Coordinates   3819392..3821797 (-) Length   801 a.a.
NCBI ID   WP_134782308.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain GR2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3814392..3826797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2I71_RS18175 (V2I71_18175) - 3815867..3816943 (-) 1077 WP_330501339.1 AI-2E family transporter -
  V2I71_RS18180 (V2I71_18180) - 3817171..3817386 (-) 216 WP_034311361.1 hypothetical protein -
  V2I71_RS18185 (V2I71_18185) - 3817376..3817834 (-) 459 WP_063575627.1 PRC-barrel domain-containing protein -
  V2I71_RS18190 (V2I71_18190) - 3817970..3818740 (-) 771 WP_098936153.1 TPM domain-containing protein -
  V2I71_RS18195 (V2I71_18195) - 3818740..3819309 (-) 570 WP_376708008.1 LemA family protein -
  V2I71_RS18200 (V2I71_18200) recD2 3819392..3821797 (-) 2406 WP_134782308.1 ATP-dependent RecD-like DNA helicase Machinery gene
  V2I71_RS18205 (V2I71_18205) - 3821834..3822499 (-) 666 WP_057277059.1 tetratricopeptide repeat protein -
  V2I71_RS18210 (V2I71_18210) mnmA 3822621..3823736 (-) 1116 WP_063575623.1 tRNA 2-thiouridine(34) synthase MnmA -
  V2I71_RS18215 (V2I71_18215) - 3823767..3824912 (-) 1146 WP_330501340.1 cysteine desulfurase family protein -
  V2I71_RS18220 (V2I71_18220) cymR 3824973..3825392 (-) 420 WP_034308657.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 801 a.a.        Molecular weight: 90525.26 Da        Isoelectric Point: 4.7971

>NTDB_id=929752 V2I71_RS18200 WP_134782308.1 3819392..3821797(-) (recD2) [Peribacillus frigoritolerans strain GR2]
MSQQDSLDLFSEEKKFMKGSHLVTIFHNEENMYSVVRIRVHETNLDYEEKEAVVTGYFPRMHEDEIYIFYGAMKEHPRFG
LQFHVEHFRKDLPQSKEGIVSYLSGDLFKGIGKKTAESIVETLGDKAISKILAQPSLLDDIPKLSGEKAKGLYDTLVEHQ
GLEQVMIALNQYGFGPQLSMKIYQMYKQDTITMVQGNPYKLVEDIEGIGFGRADELGHQLGISGSHPDRIKAACLYTLES
QCLQDGNIYIEAEQLLEAVKRLLEENKRDRIEFTNISSEIIELTQEGKIVVEDQRIYPPSLFYSEKGIVMNIKRLLAQTE
YEDQFPESEFLLALGELEERLDVSYAPAQKEAIQTALQSPMLILTGGPGTGKTTVIKGIVELYAELHGVSMDINDYKKEG
SDPFPFVLAAPTGRAAKRMAESTGLPAVTIHRLLGWNGSEGFSHDEDNQLDGRIVIIDEVSMVDTWLAHQLFKALPENVQ
VILVGDEDQLPSVGPGQVLKDLLASNCVPTVSLEHIYRQADGSSIIELAHEIKKGRLPDDVTKQQEDRSFIRCQTNQIPQ
VIEKVVANARTKGFTAKDIQVLAPMYRGPAGIDALNKMLQEVFNSNANEKRREIKFGDVIYRTGDKVLQLVNQPEEGVFN
GDMGEIVSILFAKENTDSVDKVIISFEGIEVTYTKQDLNQITHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTA
ITRSKNFLILCGEEDAFRLGIERNDEMRRKTTLREKLREILSEEEMPVEKGEVHQEASYLDILMHADPMIGMENVTPYDF
M

Nucleotide


Download         Length: 2406 bp        

>NTDB_id=929752 V2I71_RS18200 WP_134782308.1 3819392..3821797(-) (recD2) [Peribacillus frigoritolerans strain GR2]
TTGAGCCAGCAAGATTCGTTGGATTTGTTTTCAGAAGAGAAAAAGTTCATGAAAGGCAGTCATTTAGTGACGATCTTTCA
TAATGAAGAAAATATGTACTCGGTTGTGAGAATTCGTGTGCATGAAACGAATCTGGATTATGAAGAGAAGGAAGCGGTCG
TAACAGGTTATTTTCCAAGGATGCATGAGGATGAGATCTATATTTTTTATGGGGCCATGAAGGAACATCCGCGTTTTGGC
CTTCAATTCCATGTAGAGCATTTTCGCAAGGATCTGCCTCAATCCAAGGAAGGCATCGTCAGTTATTTATCAGGTGACCT
TTTCAAGGGCATTGGGAAAAAAACAGCCGAAAGCATTGTTGAGACACTGGGTGATAAGGCCATTTCAAAAATTCTGGCTC
AGCCTTCGCTGCTTGATGATATCCCGAAGCTATCAGGGGAAAAGGCAAAAGGCCTCTATGATACATTAGTCGAGCATCAA
GGTCTGGAGCAGGTTATGATCGCCTTGAATCAATATGGCTTCGGTCCGCAGCTGTCGATGAAAATCTATCAAATGTATAA
GCAGGATACGATCACGATGGTTCAGGGTAATCCGTATAAGCTCGTAGAGGATATTGAAGGGATTGGGTTTGGACGGGCGG
ATGAGCTTGGGCATCAGCTGGGCATTTCCGGCAGCCACCCCGACCGAATCAAGGCTGCGTGCTTGTATACGCTTGAATCC
CAATGCCTCCAGGACGGAAATATATACATAGAAGCCGAGCAGCTTTTGGAAGCGGTCAAACGGCTGCTGGAGGAAAATAA
ACGGGATCGCATTGAGTTCACCAACATTTCCTCGGAAATAATCGAATTGACGCAAGAGGGGAAAATCGTTGTCGAGGATC
AACGAATTTATCCGCCTTCGCTATTCTATTCGGAAAAGGGAATCGTGATGAACATCAAGCGGCTGCTTGCTCAAACCGAG
TATGAGGACCAGTTCCCCGAATCGGAGTTCTTGCTGGCACTTGGGGAGCTGGAAGAGCGGCTTGATGTTTCCTATGCCCC
GGCCCAAAAGGAAGCGATCCAGACAGCCTTGCAATCGCCGATGTTAATCTTGACTGGGGGACCTGGTACCGGTAAGACAA
CAGTCATCAAAGGCATCGTTGAGCTATATGCAGAGCTGCATGGTGTATCCATGGACATTAACGATTATAAAAAAGAAGGA
AGCGATCCCTTTCCATTTGTACTTGCGGCTCCTACTGGCCGTGCAGCGAAACGCATGGCCGAGTCGACGGGGCTCCCCGC
AGTCACGATCCACCGTTTGCTGGGGTGGAACGGAAGTGAAGGCTTTTCCCATGATGAGGATAATCAGCTGGATGGCCGTA
TCGTGATCATCGATGAGGTTTCGATGGTGGATACGTGGCTGGCCCATCAATTGTTTAAAGCTCTGCCGGAAAATGTCCAG
GTGATATTGGTTGGTGATGAAGATCAGCTGCCATCTGTAGGACCTGGGCAGGTTTTAAAGGATTTGCTTGCATCAAATTG
TGTACCGACTGTCAGTCTCGAACATATATATCGTCAAGCTGATGGGTCATCAATCATTGAATTGGCCCATGAAATCAAAA
AAGGAAGGCTTCCGGATGATGTCACGAAACAGCAGGAAGATCGATCGTTCATTCGCTGCCAAACGAATCAAATCCCCCAA
GTGATTGAGAAAGTGGTTGCCAATGCCAGGACGAAAGGCTTTACGGCCAAAGATATACAGGTGCTGGCCCCCATGTATAG
AGGGCCTGCCGGAATTGATGCACTGAATAAAATGCTTCAGGAAGTGTTCAATAGCAATGCGAATGAAAAGCGGCGGGAAA
TAAAATTCGGCGATGTGATATATAGAACCGGAGATAAGGTGCTTCAACTGGTGAACCAGCCGGAGGAGGGTGTCTTTAAT
GGCGATATGGGGGAAATCGTGTCCATATTGTTCGCTAAAGAAAATACCGATTCTGTCGATAAAGTGATCATATCGTTCGA
AGGCATCGAAGTGACTTATACAAAGCAGGATTTGAACCAGATCACACATGCCTATTGCTGCTCCATCCATAAGTCGCAGG
GAAGCGAATTCCCTATCGTCATTTTACCTGTAGTGAAAAGTTATTACCGGATGCTCCGCCGTAATTTATTGTATACGGCG
ATTACCCGCAGTAAAAATTTCTTGATCCTATGTGGTGAAGAAGATGCATTCCGTTTAGGGATCGAGCGTAATGATGAGAT
GCGCCGGAAAACGACCTTGCGTGAAAAGCTGCGGGAGATCTTGAGTGAAGAAGAGATGCCGGTTGAAAAGGGAGAGGTAC
ATCAAGAGGCAAGTTATCTTGATATTCTTATGCATGCTGACCCGATGATCGGGATGGAGAATGTCACGCCATATGATTTT
ATGTAG

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(595-666)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

AAA domain (AAA_30)

(345-555)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(683-731)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

62.672

100

0.627