Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   V1500_RS19645 Genome accession   NZ_CP143547
Coordinates   3991670..3994039 (-) Length   789 a.a.
NCBI ID   WP_409301889.1    Uniprot ID   -
Organism   Peribacillus sp. SCS-155     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3986670..3999039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1500_RS19635 (V1500_19635) argS 3989394..3991085 (+) 1692 WP_409301886.1 arginine--tRNA ligase -
  V1500_RS19640 (V1500_19640) - 3991149..3991679 (-) 531 WP_409301887.1 adenine phosphoribosyltransferase -
  V1500_RS19645 (V1500_19645) recJ 3991670..3994039 (-) 2370 WP_409301889.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  V1500_RS19650 (V1500_19650) - 3994100..3994411 (-) 312 WP_409301891.1 lipopolysaccharide assembly LapA domain-containing protein -
  V1500_RS19655 (V1500_19655) secDF 3994941..3997196 (-) 2256 WP_409301892.1 protein translocase subunit SecDF -
  V1500_RS19660 (V1500_19660) - 3997526..3997828 (-) 303 WP_409301894.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 789 a.a.        Molecular weight: 88338.10 Da        Isoelectric Point: 5.3197

>NTDB_id=929617 V1500_RS19645 WP_409301889.1 3991670..3994039(-) (recJ) [Peribacillus sp. SCS-155]
MLQSKTRWQVAAADEDVVDQLINELHITPLVAKLLANRGLRTPEAARSFLLINEQDFHDPFLLKGMDLAVDRIKEAIHNK
EKIRIFGDYDADGVSSTTVLMETLQMMGANVEFYIPNRFTEGYGPNEAAFRLAAQNDVRLLITVDTGISALNEAKLAREL
GMDYIVTDHHEPGPELPDALAIIHPKLEGNTYPFKDLAGVGVAFKLAHALLGYVPEKMLEIAAIGTIADLVPLYGENRLI
AAKGISMLRKTSRPGILALIKKAGLQQQALDEESVGFSMAPRINAAGRLDTADPAVELLMAQDMHTAEMLAAEIDALNKE
RQEIVAEISEAAIKEVEANFPLSENSVIVVGKEGWNAGVIGIVASRLVERFYRPTIVLSYDPVKGLAKGSARSIAGFDLY
KNLSECRDILPHFGGHPMAAGMTLKIEDVGQLRERLHALANEQLTAEDFIPVTKLDGVTSIQDISVKTIEEMAMLAPFGM
NNPKPKILVEEAAVASIRKIGSNQNHLKLQLGDSNASLDGVGFGIGHLYEQISPISTISVVGELSINEWNNMRKPQIFVQ
DVAVTHWQLFDYRGIDRVQHWLPNVPADNARIIVFSKESLNRFPFLNENRNVTHIKNIAEAENIEVNGKSIVLLDMPGSK
EILEAVFKNKQPARIYTHFYQQQEHFFSTLPTREHFKWFYSYLAKKGPVDIKRDGNDIAKYRGWSRDTIDFISKVFFELD
FVTIDNGLMRLNKNTDKRDLSDAPSFKRKQQQIELDKELLYSSYAQLFEWFDHLVREVPSLEEETAQWT

Nucleotide


Download         Length: 2370 bp        

>NTDB_id=929617 V1500_RS19645 WP_409301889.1 3991670..3994039(-) (recJ) [Peribacillus sp. SCS-155]
ATGCTACAATCAAAAACTCGTTGGCAGGTAGCTGCTGCTGATGAAGATGTTGTCGACCAATTAATCAATGAGCTTCATAT
TACACCTCTGGTTGCAAAACTATTGGCAAATCGCGGGCTGCGCACTCCTGAAGCAGCACGTTCCTTTTTATTAATAAATG
AACAAGACTTCCATGATCCATTCCTATTAAAAGGAATGGATCTGGCAGTCGATAGGATAAAAGAGGCTATTCATAACAAA
GAGAAGATCCGTATTTTTGGTGACTATGATGCTGACGGAGTAAGCAGTACAACAGTACTGATGGAAACTCTTCAAATGAT
GGGGGCGAATGTCGAGTTTTATATCCCTAATCGGTTCACTGAAGGGTATGGCCCTAATGAAGCAGCATTCAGGCTTGCGG
CTCAAAATGATGTGAGGCTGCTGATAACCGTTGATACGGGAATTTCTGCCTTGAATGAAGCAAAGCTTGCGAGGGAGCTT
GGCATGGATTATATCGTGACAGACCATCACGAGCCAGGGCCAGAGCTGCCGGATGCATTGGCTATCATACATCCAAAGCT
GGAAGGCAATACATATCCATTTAAGGATTTGGCGGGTGTGGGAGTTGCTTTTAAACTGGCTCATGCCTTATTGGGTTATG
TACCTGAGAAAATGCTGGAGATAGCTGCGATAGGGACGATAGCAGACTTGGTCCCTTTGTATGGGGAAAACAGGCTGATT
GCGGCAAAAGGGATCAGCATGCTCAGAAAAACGAGCCGCCCTGGCATATTGGCATTAATTAAAAAGGCCGGGCTGCAACA
GCAGGCATTGGATGAAGAATCAGTCGGCTTCAGTATGGCACCAAGAATCAATGCAGCAGGAAGACTGGATACGGCTGACC
CGGCTGTTGAGCTTTTAATGGCACAAGATATGCATACAGCGGAAATGCTTGCCGCTGAAATTGACGCATTAAATAAAGAA
AGGCAGGAGATTGTTGCTGAAATTTCAGAAGCGGCAATCAAGGAAGTAGAAGCCAATTTCCCTCTTAGTGAAAATAGCGT
CATCGTTGTAGGTAAGGAAGGCTGGAATGCCGGTGTGATTGGTATTGTGGCTTCCAGGCTGGTAGAACGTTTTTATAGAC
CGACCATTGTATTGAGCTATGATCCTGTTAAAGGGCTGGCAAAAGGTTCTGCCAGGAGCATTGCAGGATTTGATTTATAC
AAGAATTTATCCGAGTGCCGTGACATTTTGCCTCATTTTGGCGGGCATCCGATGGCGGCAGGGATGACTCTGAAAATAGA
GGATGTTGGGCAGCTTCGGGAACGATTGCATGCATTGGCAAATGAACAGCTTACCGCCGAGGATTTCATTCCAGTGACAA
AGCTGGACGGCGTAACCAGCATTCAGGATATATCAGTGAAAACCATTGAAGAGATGGCCATGCTCGCTCCATTCGGCATG
AACAATCCAAAGCCGAAGATTCTTGTGGAAGAAGCAGCAGTTGCCTCAATCCGAAAGATAGGATCAAACCAAAACCACCT
CAAACTTCAGCTAGGTGATTCAAATGCTTCACTGGATGGGGTAGGCTTTGGCATCGGACATTTGTATGAACAGATTTCTC
CGATTTCCACCATCTCTGTTGTTGGGGAACTTTCCATAAATGAATGGAATAATATGAGGAAACCGCAGATTTTTGTTCAG
GATGTAGCCGTCACCCACTGGCAGCTTTTTGACTATCGAGGCATAGACAGGGTACAGCATTGGCTTCCCAATGTTCCGGC
GGACAATGCCAGGATTATCGTTTTCTCCAAAGAATCTCTTAATCGTTTCCCATTTCTGAATGAAAACCGCAATGTTACCC
ATATCAAGAATATTGCCGAAGCTGAAAATATCGAGGTGAACGGCAAGAGTATTGTTCTTTTGGACATGCCGGGCAGTAAA
GAAATACTGGAGGCTGTCTTTAAAAATAAGCAGCCAGCAAGAATTTATACCCATTTTTACCAGCAGCAGGAACACTTTTT
CAGTACTTTGCCAACCAGGGAGCATTTTAAATGGTTCTATTCATATTTGGCAAAGAAAGGACCGGTCGATATTAAGCGTG
ATGGGAATGATATAGCTAAATACCGTGGCTGGTCCCGTGATACAATTGATTTTATCTCAAAGGTGTTTTTTGAATTGGAT
TTTGTTACAATAGACAATGGATTAATGAGGCTAAATAAGAATACCGATAAACGTGATTTAAGCGATGCTCCATCATTTAA
GCGCAAACAGCAGCAAATTGAGCTGGACAAAGAATTGCTCTACAGCTCTTATGCTCAGTTATTTGAGTGGTTTGATCATT
TAGTACGTGAGGTTCCAAGCCTCGAGGAGGAAACAGCGCAATGGACTTGA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-771)

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(315-439)

RecJ OB domain (RecJ_OB)

(456-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.395

99.493

0.541