Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   V1500_RS19530 Genome accession   NZ_CP143547
Coordinates   3963340..3965763 (-) Length   807 a.a.
NCBI ID   WP_409301855.1    Uniprot ID   -
Organism   Peribacillus sp. SCS-155     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3958340..3970763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1500_RS19510 (V1500_19510) - 3961022..3962089 (-) 1068 WP_409301850.1 AI-2E family transporter -
  V1500_RS19515 (V1500_19515) - 3962351..3962515 (-) 165 WP_409301851.1 hypothetical protein -
  V1500_RS19520 (V1500_19520) - 3962487..3962678 (-) 192 WP_409306049.1 hypothetical protein -
  V1500_RS19525 (V1500_19525) - 3962650..3963327 (-) 678 WP_409301853.1 PRC-barrel domain-containing protein -
  V1500_RS19530 (V1500_19530) recD2 3963340..3965763 (-) 2424 WP_409301855.1 ATP-dependent RecD-like DNA helicase Machinery gene
  V1500_RS19535 (V1500_19535) - 3965797..3966513 (-) 717 WP_409301856.1 tetratricopeptide repeat protein -
  V1500_RS19540 (V1500_19540) mnmA 3966606..3967721 (-) 1116 WP_409306051.1 tRNA 2-thiouridine(34) synthase MnmA -
  V1500_RS19545 (V1500_19545) - 3967784..3968926 (-) 1143 WP_409301858.1 cysteine desulfurase family protein -
  V1500_RS19550 (V1500_19550) cymR 3969173..3969592 (-) 420 WP_409301860.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 807 a.a.        Molecular weight: 91003.75 Da        Isoelectric Point: 4.8189

>NTDB_id=929616 V1500_RS19530 WP_409301855.1 3963340..3965763(-) (recD2) [Peribacillus sp. SCS-155]
MAQQDSFDLFSEDKLFMKGRHLVTVFHNEQNMYSVVRIRVDETNINYEESEAVVTGYFPRIHEHETYIFYGQMKDHPRFG
LQFHVEHFRKDMPQSKDGIINYLSSELFKGIGKKTAQGIVEALGENAISKILEQPSLLDSIPKLTPEKAKGLYDTLVEHQ
GLEQIMVALNEYGFGPQLAMKIYQTYKHETLNVVQSNPYKLVEDIEGIGFGRADELGYQLGISGSHPDRIKAACLYCLDS
QCMQEGNVYLEADQLLELVKKLLEDNKRDRIEFQEISDEVIKLGEEGKIIVDERRIYPPSLYFSEKGIVSNIKRILSQTE
YESQFPESEFLLALGELEERLGVEYAPAQKEAIQTALQSPMLILTGGPGTGKTTVIKGIVELYSELHGISMDINDYKNED
DPFPFVLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGSEGFSYDEDNPINGRLVIIDEVSMVDTWLAHQLLKALPEHVQV
IFVGDEDQLPSVGPGQVLKDLIESECIPTVALDQIYRQADGSSIIELAHEIKKGRIPEGVDRQQADRSFIRCSTAQISQV
VEKVVENARKKGFSARDIQVLAPMYKGPAGIDSLNKMLQEVLNSNAEEKRREIKFGELIYRTGDKVLQLVNQPESGVFNG
DMGEIVSIIFAKENTDNVDKVIISFEGIEVTYTRQDLMQITHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLIYTAI
TRSKNFLILCGEEEALRMGVERNNESQRKTTLVAKVKEALGGPAESKSVVMVVKEAEPRDYYSLLMNTDPLIGMENVSPY
DFMEKNS

Nucleotide


Download         Length: 2424 bp        

>NTDB_id=929616 V1500_RS19530 WP_409301855.1 3963340..3965763(-) (recD2) [Peribacillus sp. SCS-155]
TTGGCTCAGCAGGATTCATTTGATTTATTTTCCGAAGATAAGTTATTTATGAAGGGCAGGCATCTGGTGACTGTTTTTCA
CAATGAACAAAATATGTATTCCGTTGTCCGAATCCGCGTGGACGAAACGAATATTAATTATGAAGAAAGTGAAGCTGTTG
TCACAGGCTACTTCCCTCGGATTCATGAACATGAAACGTATATTTTCTATGGGCAAATGAAGGACCATCCGCGCTTTGGG
CTGCAATTCCACGTAGAACATTTTCGAAAGGACATGCCCCAATCGAAGGACGGAATCATTAATTATTTATCCAGTGAGCT
ATTCAAAGGGATTGGTAAAAAGACTGCACAGGGGATTGTCGAAGCACTAGGGGAAAATGCGATTTCGAAGATTTTGGAAC
AGCCATCCCTGCTTGACAGCATACCAAAGCTGACTCCGGAAAAAGCAAAAGGCCTGTATGATACATTAGTTGAACACCAG
GGTCTGGAACAGATAATGGTTGCGTTGAATGAATACGGATTTGGACCGCAGCTTGCCATGAAAATTTACCAGACATACAA
GCATGAAACACTGAATGTTGTCCAGTCCAATCCATATAAGCTCGTCGAGGATATCGAAGGTATAGGATTTGGAAGGGCTG
ATGAGCTTGGATATCAATTGGGTATATCAGGAAGCCACCCAGATCGTATCAAGGCTGCCTGTCTTTACTGTCTGGACTCG
CAGTGTATGCAAGAGGGGAATGTATATCTGGAAGCAGATCAATTGCTCGAGCTTGTGAAAAAGCTATTGGAAGACAATAA
ACGGGATAGGATCGAGTTTCAGGAAATTTCTGATGAAGTAATAAAGCTTGGTGAGGAAGGAAAAATCATTGTAGACGAGA
GGAGGATTTATCCTCCTTCCCTTTACTTTTCAGAGAAGGGAATCGTCTCTAATATTAAGCGGATCCTTTCCCAGACAGAA
TACGAAAGCCAGTTTCCTGAATCCGAATTCCTGCTTGCGCTGGGAGAGCTGGAGGAACGGCTCGGTGTGGAGTATGCACC
CGCACAAAAAGAAGCAATCCAGACTGCACTTCAGTCTCCCATGCTCATCCTGACGGGCGGGCCGGGAACCGGGAAAACTA
CAGTTATCAAAGGGATTGTTGAGCTCTATAGTGAACTTCATGGGATATCAATGGATATAAATGATTATAAAAACGAGGAC
GACCCCTTTCCGTTCGTTCTTGCTGCTCCTACAGGAAGGGCTGCGAAGCGGATGTCCGAATCCACAGGGCTGCCTGCCGT
GACCATCCACAGGCTCCTTGGCTGGAATGGCAGTGAAGGCTTTTCATATGATGAGGATAATCCCATCAATGGCCGGCTTG
TCATAATTGACGAGGTATCCATGGTTGATACATGGCTTGCGCATCAGCTGCTCAAGGCACTTCCGGAACATGTTCAGGTA
ATTTTTGTAGGAGATGAGGACCAGCTCCCATCTGTCGGTCCTGGGCAGGTATTAAAGGATTTGATTGAATCAGAATGTAT
TCCTACGGTTGCACTGGACCAAATCTACCGTCAGGCTGATGGATCCTCGATTATCGAGCTAGCCCATGAAATCAAAAAGG
GACGTATTCCCGAAGGTGTGGATAGACAGCAGGCCGACCGTTCTTTCATTCGCTGCAGCACCGCCCAAATCTCGCAGGTA
GTGGAAAAGGTTGTGGAAAATGCCCGAAAGAAGGGATTTTCTGCACGGGATATTCAGGTACTTGCACCAATGTACAAGGG
CCCTGCCGGCATCGACAGCTTAAATAAGATGCTTCAGGAAGTGCTAAACAGCAACGCTGAAGAAAAAAGGCGCGAGATAA
AATTCGGAGAGCTGATTTACAGAACGGGAGATAAGGTTTTGCAGCTGGTGAATCAGCCTGAGAGCGGCGTCTTTAACGGC
GATATGGGTGAAATAGTATCCATTATCTTTGCCAAAGAAAATACCGATAATGTTGATAAGGTGATTATCTCGTTTGAGGG
AATAGAAGTCACCTATACAAGGCAGGACCTCATGCAAATCACGCATGCTTACTGCTGCAGCATCCATAAATCACAAGGAT
CCGAATTTCCGATCGTGATTTTGCCGGTCGTCAAGAGCTATTATCGCATGCTTAGAAGAAACCTTATCTACACAGCTATC
ACGAGGAGCAAAAACTTCCTCATTCTGTGCGGCGAGGAAGAGGCCCTCCGGATGGGGGTTGAAAGAAATAATGAATCGCA
GAGAAAAACAACCCTGGTGGCAAAAGTGAAAGAAGCACTGGGAGGGCCGGCAGAATCTAAATCAGTGGTAATGGTTGTAA
AAGAGGCAGAACCTAGAGACTACTATTCCTTGTTAATGAATACCGACCCTTTGATCGGGATGGAAAATGTATCACCCTAT
GATTTTATGGAAAAGAATTCTTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-665)

AAA domain (AAA_30)

(345-553)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(682-730)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

59.13

99.752

0.59