Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   V1502_RS15205 Genome accession   NZ_CP143546
Coordinates   3065848..3068193 (-) Length   781 a.a.
NCBI ID   WP_409251481.1    Uniprot ID   -
Organism   Bacillus sp. SCS-153A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3060848..3073193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1502_RS15190 (V1502_15190) dtd 3062172..3062612 (-) 441 WP_409251478.1 D-aminoacyl-tRNA deacylase -
  V1502_RS15195 (V1502_15195) - 3062628..3064820 (-) 2193 WP_409251479.1 RelA/SpoT family protein -
  V1502_RS15200 (V1502_15200) - 3065320..3065832 (-) 513 WP_409251480.1 adenine phosphoribosyltransferase -
  V1502_RS15205 (V1502_15205) recJ 3065848..3068193 (-) 2346 WP_409251481.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  V1502_RS15210 (V1502_15210) - 3068719..3069063 (-) 345 WP_409251482.1 lipopolysaccharide assembly LapA domain-containing protein -
  V1502_RS15215 (V1502_15215) - 3069077..3070003 (-) 927 WP_409251483.1 cation diffusion facilitator family transporter -
  V1502_RS15220 (V1502_15220) secDF 3070124..3072391 (-) 2268 WP_409251484.1 protein translocase subunit SecDF -
  V1502_RS15225 (V1502_15225) - 3072524..3072844 (-) 321 WP_409251485.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 781 a.a.        Molecular weight: 87812.19 Da        Isoelectric Point: 4.8921

>NTDB_id=929569 V1502_RS15205 WP_409251481.1 3065848..3068193(-) (recJ) [Bacillus sp. SCS-153A]
MLKSKSRWLIKDHGESNVNKLQDELNIPPIVSKLLANRGIHDIEEARTFLYGEEEPFHDPFLMLDMDKAVDRVKKAIEYG
EAILIFGDYDADGVSSTSTMMQTLLELGAEVHFYIPNRFTEGYGPNENAFRWAAEEGFSLIITVDTGIAALKEAQLAKEL
GVDLIITDHHEPGPELPEALAILHPKREGSTYPFPDLAGVGVAFKFAHALYGSLPEHLLDLAAIGTIADLVPLKGENRAM
AKKGLAKLRNSKRPGLIALCKAANAKMNEISEETVGFAIAPRINAIGRLGDADPAVDLMLSDNMEESMAIAEEIDGINKE
RQAIVNEMTQEAIEMVNNEFPLTHNSVLVIGKEGWNSGVVGIVASRLVEKFYRPVIVLSFDSEKGTAKGSARSIAGFDLF
KNLSQCRELLPHFGGHPMAAGMTLELENVAELRSRLNTFAEEQLTEEDFIPLTELDAAIKLEEVDIETIESLEMLAPFGM
GNPKPKLLIEGVSISGMRKIGGNQDHLKLSLQKDLHTLDSIGFGMGEFADHISPLSEVSVIGELSINEWNNIRKPQLFLK
DVTVDHWQLFDMRGIKPVNRWFNRVPSQHRKFIAFNQSTIDRLPLDGYHDDILLISSTEEASGLLTRTSSIVFLDMPPQA
EWLETVVKSAEPERIYAHFDHEEDHFFSTIPNRDHFKWYYGFLLKRDTFDLKKHGGQLAQHKGWSRETIEFMSKVFFELD
FVTIKNGLISVNPVKVKRDLEESITYRQKQEQYNLENELLYSSYQELKNWFDKKTGMVCNI

Nucleotide


Download         Length: 2346 bp        

>NTDB_id=929569 V1502_RS15205 WP_409251481.1 3065848..3068193(-) (recJ) [Bacillus sp. SCS-153A]
ATGTTAAAATCAAAATCACGCTGGTTAATTAAAGACCATGGTGAGTCGAATGTGAATAAATTGCAAGATGAATTGAATAT
ACCGCCGATTGTCAGCAAGCTGCTGGCGAACAGGGGAATACATGATATAGAAGAAGCCCGCACCTTCTTGTACGGTGAGG
AGGAGCCATTTCATGATCCGTTTCTGATGTTGGACATGGACAAGGCAGTAGATCGGGTGAAAAAAGCCATTGAATATGGT
GAGGCTATCCTGATTTTTGGGGATTATGATGCGGACGGTGTCAGTTCGACTTCCACGATGATGCAGACACTGCTTGAGCT
TGGAGCAGAAGTGCACTTTTACATTCCGAATCGTTTTACCGAAGGGTATGGGCCGAATGAGAATGCTTTCCGGTGGGCGG
CTGAAGAAGGGTTTTCATTAATCATTACCGTTGATACCGGCATTGCGGCTCTAAAAGAAGCTCAGCTGGCCAAAGAATTG
GGGGTCGACTTGATCATCACTGATCACCACGAGCCTGGACCGGAACTACCTGAAGCATTAGCAATCCTCCATCCTAAAAG
GGAAGGCAGTACTTATCCTTTTCCTGATCTTGCGGGAGTAGGGGTAGCATTCAAATTCGCACATGCTTTGTACGGAAGTT
TGCCGGAACATCTTCTTGATCTTGCGGCAATTGGAACGATCGCAGACCTTGTGCCATTAAAAGGTGAAAACAGGGCGATG
GCCAAAAAGGGATTGGCGAAGCTTCGCAACAGTAAACGTCCAGGCCTGATAGCTCTTTGCAAGGCAGCGAATGCGAAGAT
GAATGAAATCTCAGAAGAGACGGTAGGCTTTGCGATCGCGCCGAGAATCAATGCAATAGGCAGGCTGGGAGATGCGGACC
CTGCAGTCGACTTGATGTTATCTGATAATATGGAAGAGTCAATGGCGATTGCCGAGGAAATCGACGGTATTAACAAAGAA
AGGCAAGCCATTGTGAATGAGATGACCCAGGAAGCGATTGAAATGGTCAACAATGAGTTCCCTCTTACCCATAATTCAGT
TTTAGTCATCGGAAAAGAAGGCTGGAATTCTGGGGTGGTTGGGATCGTTGCTTCCAGGCTCGTTGAGAAGTTCTACAGGC
CTGTCATTGTGTTGAGTTTTGACAGTGAAAAAGGGACTGCTAAAGGCTCGGCCAGAAGTATAGCAGGCTTCGATCTTTTT
AAGAACCTTTCACAATGCAGAGAGCTGCTTCCTCATTTCGGGGGTCATCCAATGGCGGCCGGAATGACATTGGAGTTAGA
GAATGTTGCCGAGCTTAGGAGCCGCTTGAATACATTTGCTGAAGAACAACTGACAGAAGAGGATTTCATTCCGCTGACAG
AATTGGATGCCGCCATTAAATTAGAGGAAGTCGATATTGAAACGATCGAGTCCCTTGAGATGCTGGCTCCATTTGGAATG
GGCAATCCTAAGCCCAAGTTGCTAATTGAAGGTGTTTCCATCTCCGGCATGCGGAAAATTGGAGGCAACCAGGATCATTT
AAAGCTTTCCCTGCAAAAAGATTTGCATACATTGGATAGTATCGGATTTGGCATGGGAGAGTTTGCGGATCATATCTCAC
CGCTTTCCGAAGTTTCGGTGATAGGGGAGCTCTCAATCAACGAATGGAATAATATCCGAAAACCACAGCTATTCCTTAAA
GACGTTACTGTAGATCATTGGCAGCTTTTCGATATGAGAGGCATCAAACCTGTCAACAGGTGGTTCAATAGAGTTCCTTC
CCAACACAGGAAGTTTATTGCCTTCAATCAGTCGACTATTGACCGCCTTCCACTTGATGGCTACCATGATGATATTTTAT
TGATCTCATCAACTGAAGAAGCCTCCGGACTTTTAACGAGGACGTCCAGCATTGTATTCCTGGACATGCCACCTCAAGCA
GAGTGGCTTGAGACTGTTGTGAAGTCTGCAGAGCCAGAGCGGATATATGCCCATTTTGATCATGAAGAGGATCACTTCTT
CAGCACGATTCCGAACCGTGATCACTTTAAATGGTACTATGGTTTTCTATTAAAGAGGGATACTTTCGATCTTAAAAAGC
ATGGCGGGCAGCTTGCCCAGCATAAAGGCTGGTCGAGAGAAACAATTGAATTCATGTCAAAGGTGTTTTTTGAGCTGGAT
TTTGTTACAATAAAAAATGGATTAATTTCCGTCAATCCTGTAAAAGTTAAGAGAGATTTGGAAGAATCGATTACTTATCG
ACAAAAACAGGAACAATATAATCTAGAGAATGAATTGTTGTACTCATCTTATCAGGAACTTAAAAACTGGTTTGATAAGA
AGACTGGAATGGTCTGCAACATATGA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(315-439)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-771)

RecJ OB domain (RecJ_OB)

(456-561)

DHH family (DHH)

(83-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.722

98.976

0.542