Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   V1502_RS07255 Genome accession   NZ_CP143546
Coordinates   1493077..1493856 (+) Length   259 a.a.
NCBI ID   WP_409253693.1    Uniprot ID   -
Organism   Bacillus sp. SCS-153A     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1488077..1498856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1502_RS07240 (V1502_07240) xerC 1489736..1490635 (+) 900 WP_409253690.1 tyrosine recombinase XerC -
  V1502_RS07245 (V1502_07245) hslV 1490656..1491198 (+) 543 WP_409253691.1 ATP-dependent protease subunit HslV -
  V1502_RS07250 (V1502_07250) hslU 1491505..1492917 (+) 1413 WP_409253692.1 HslU--HslV peptidase ATPase subunit -
  V1502_RS07255 (V1502_07255) codY 1493077..1493856 (+) 780 WP_409253693.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  V1502_RS07260 (V1502_07260) flgB 1494700..1495089 (+) 390 WP_409253694.1 flagellar basal body rod protein FlgB -
  V1502_RS07265 (V1502_07265) flgC 1495092..1495553 (+) 462 WP_409253695.1 flagellar basal body rod protein FlgC -
  V1502_RS07270 (V1502_07270) fliE 1495565..1495870 (+) 306 WP_409253696.1 flagellar hook-basal body complex protein FliE -
  V1502_RS07275 (V1502_07275) fliF 1495924..1497510 (+) 1587 WP_409253697.1 flagellar basal-body MS-ring/collar protein FliF -
  V1502_RS07280 (V1502_07280) fliG 1497522..1498538 (+) 1017 WP_409253698.1 flagellar motor switch protein FliG -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28837.17 Da        Isoelectric Point: 4.7188

>NTDB_id=929556 V1502_RS07255 WP_409253693.1 1493077..1493856(+) (codY) [Bacillus sp. SCS-153A]
MNLLSKTRTINAMLQKAAGKPVNFKEMAETLSSVIIANVFVVSRRGKLLGFAVNQKIENERMKKMLEDRQFPEEYTNSLF
NVQETSLNLDIDSQYTAFPVENRDLFKNGLTTIVPIIGGGERLGTLILARLEDSFDDDDLILGEYGATVVGMEILREKSE
EIEVEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLVELDKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=929556 V1502_RS07255 WP_409253693.1 1493077..1493856(+) (codY) [Bacillus sp. SCS-153A]
ATGAATTTACTAAGTAAAACGAGAACGATTAATGCGATGCTGCAAAAAGCGGCAGGAAAACCAGTTAATTTCAAAGAAAT
GGCAGAAACATTAAGCTCTGTCATTATTGCCAATGTATTCGTGGTCAGTCGCCGCGGAAAGCTTTTAGGGTTTGCTGTAA
ATCAAAAAATTGAGAATGAAAGAATGAAAAAAATGCTGGAAGACCGCCAGTTTCCTGAAGAATATACAAACAGCCTTTTC
AACGTTCAGGAAACTTCTTTAAACTTGGATATTGACAGCCAATACACGGCATTCCCTGTGGAAAACAGAGATTTGTTCAA
GAATGGATTAACGACTATTGTGCCGATCATCGGTGGAGGGGAACGCCTAGGCACGCTTATCCTTGCCCGTCTTGAAGACA
GCTTTGATGATGACGACCTAATTCTTGGTGAGTATGGAGCTACTGTAGTAGGTATGGAAATTCTTCGTGAAAAATCAGAA
GAAATTGAAGTCGAAGCACGCAGCAAAGCTGTTGTTCAGATGGCAATCAGTTCCCTTTCTTACAGTGAATTAGAGGCAAT
TGAACATATTTTTGAAGAGCTTGATGGAAATGAAGGCCTTCTTGTTGCTTCGAAAATTGCTGACAGGGTAGGAATTACAA
GATCTGTCATCGTTAACGCACTTCGCAAACTTGAAAGTGCAGGAGTCATAGAGTCACGTTCATTGGGAATGAAGGGAACT
TACATAAAGGTCCTGAATGATAAATTCCTGGTAGAACTCGATAAACTAAAAACTAACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(2-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

86.1

100

0.861
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.368

95.367

0.452