Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   V1501_RS15395 Genome accession   NZ_CP143545
Coordinates   3038420..3040777 (-) Length   785 a.a.
NCBI ID   WP_409289466.1    Uniprot ID   -
Organism   Peribacillus sp. SCS-37     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3033420..3045777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1501_RS15380 (V1501_15380) dtd 3034944..3035390 (-) 447 WP_409289460.1 D-aminoacyl-tRNA deacylase -
  V1501_RS15385 (V1501_15385) - 3035402..3037591 (-) 2190 WP_409289462.1 RelA/SpoT family protein -
  V1501_RS15390 (V1501_15390) - 3037917..3038429 (-) 513 WP_409289464.1 adenine phosphoribosyltransferase -
  V1501_RS15395 (V1501_15395) recJ 3038420..3040777 (-) 2358 WP_409289466.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  V1501_RS15400 (V1501_15400) - 3040840..3041187 (-) 348 WP_409289467.1 lipopolysaccharide assembly LapA domain-containing protein -
  V1501_RS15405 (V1501_15405) secDF 3041495..3043750 (-) 2256 WP_409289469.1 protein translocase subunit SecDF -
  V1501_RS15410 (V1501_15410) - 3043976..3044275 (-) 300 WP_409289471.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 87442.88 Da        Isoelectric Point: 5.3353

>NTDB_id=929513 V1501_RS15395 WP_409289466.1 3038420..3040777(-) (recJ) [Peribacillus sp. SCS-37]
MLKSKTRWILKDVNTERVQELAEQLKITPLVSKLLVNRGLEDADSARSFLFSEDEPFHDPFLFNDMEKAVERIHRAIQDK
ESILIFGDYDADGVTSTSVLMITLKQLGADIRYYIPNRFTEGYGPNIPAFERAVKEGASLIITVDTGISATAEADFLKNA
GIDYIITDHHEPGPVLPSALALIHPKIPGSTYPFKELAGVGVAFKLAHALTGRLPKELLELAAIGTIADLVPLFGENRLI
AAAGIRQLQKTDRPGLKAILKKANGRQDSVNEETIGFGIAPRINAAGRLGSANPAVELLLTIDGEKAELLAAEIDQLNKE
RQAIVSRTVEEAVKEVEENFPASEHKVIIVGKSGWNPGIVGIVASKLVDKFYRPAIVLSFDEEKGIAKGSARSIQGFDLF
ANLSKCRDILPHFGGHPMAAGMTLQLSDVESLRMRMNELAYEEMTDEDFIPITNLDSEIALDEISLSAIEEIAMLSPFGM
GNPKPRVLIDSVPIESIKKIGADKNHLKIMLNDGRAVLDGVGFGLGEQYDHISPFSKVSVIGELSVNEWNNVRKPQIFLS
DIAVSSWQLFDCRGVSPAKWLDVPGAGDFRIIVFNQETLTSLPPGRESQAVLFDPSASAHGIDGKNIVLFDMPKDRDSLA
ALLAGHKPHRIYAHFQQRQSHFFSTRPSREHFKWFYAFLAQRDSFDLRAHGGQLAKQRGWTKETVEFMSQVFFELEFVKI
NNGLITLNKSVKKRDLGDSVAYRQKQEQFELEQELLYSTYRELYDKFNQLIEDTAFLEEENKQWI

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=929513 V1501_RS15395 WP_409289466.1 3038420..3040777(-) (recJ) [Peribacillus sp. SCS-37]
ATGCTTAAATCAAAAACTCGCTGGATCCTGAAAGATGTGAATACTGAGAGAGTGCAAGAATTAGCGGAACAGTTAAAGAT
CACACCTCTTGTGTCAAAATTATTAGTGAACCGTGGACTGGAAGATGCTGATTCGGCACGGTCTTTTTTATTTAGTGAAG
ATGAGCCCTTCCATGATCCCTTCCTTTTCAATGACATGGAAAAGGCTGTCGAGCGGATACATAGAGCGATTCAAGATAAA
GAAAGTATATTGATCTTCGGCGATTATGACGCAGATGGAGTCACCAGCACCTCAGTGCTTATGATTACGCTCAAACAGCT
GGGAGCAGATATCCGCTACTATATCCCGAACCGATTTACGGAAGGCTATGGACCCAATATTCCTGCATTTGAAAGAGCGG
TGAAGGAAGGAGCAAGCCTGATTATCACTGTTGATACAGGAATATCCGCCACAGCTGAAGCGGATTTTCTTAAAAATGCC
GGCATAGATTATATCATAACGGACCACCATGAGCCTGGCCCGGTTCTTCCGTCTGCCCTTGCACTTATACATCCTAAAAT
TCCTGGGAGTACATATCCATTCAAGGAGCTGGCAGGGGTGGGGGTGGCATTTAAGCTTGCTCATGCATTGACCGGCAGGC
TGCCAAAGGAATTGCTTGAGCTTGCAGCCATCGGGACAATAGCAGACTTGGTGCCCTTATTTGGTGAAAACAGGCTGATC
GCCGCTGCAGGCATCAGACAGCTCCAAAAAACGGACCGCCCGGGATTGAAAGCCATCCTGAAAAAGGCAAATGGCAGGCA
GGACTCTGTAAATGAGGAAACGATCGGGTTTGGAATCGCCCCGAGGATCAATGCGGCCGGAAGGCTGGGCAGTGCAAATC
CTGCAGTTGAACTGCTGCTTACAATTGACGGGGAAAAAGCTGAACTCCTTGCAGCAGAGATTGATCAACTGAATAAAGAA
CGCCAGGCGATTGTAAGCCGGACCGTTGAAGAAGCCGTTAAGGAAGTGGAAGAGAACTTCCCGGCAAGCGAGCATAAAGT
AATCATTGTCGGAAAATCCGGCTGGAACCCTGGCATCGTGGGTATTGTAGCATCAAAGCTTGTGGATAAATTCTATCGTC
CAGCTATTGTACTCAGCTTTGACGAGGAAAAGGGGATTGCCAAAGGTTCGGCAAGAAGTATCCAGGGCTTTGATTTATTC
GCGAACCTGTCAAAATGCCGGGATATTCTTCCTCATTTCGGCGGACATCCCATGGCCGCAGGAATGACTCTTCAGCTCAG
TGATGTGGAAAGCCTCAGAATGCGGATGAATGAGCTTGCCTACGAAGAGATGACCGACGAAGATTTCATTCCCATAACAA
ATCTGGACAGTGAAATAGCTCTCGATGAAATCTCCCTTTCAGCCATTGAAGAAATAGCCATGCTTTCTCCTTTTGGGATG
GGGAATCCAAAGCCCAGGGTTTTGATTGATTCCGTTCCGATCGAGTCCATTAAAAAAATAGGAGCAGACAAAAATCATCT
TAAGATTATGCTGAATGATGGCAGGGCGGTACTGGACGGAGTGGGATTCGGCCTTGGGGAACAATATGACCATATCTCAC
CTTTTTCCAAAGTATCAGTTATTGGAGAACTGTCGGTCAATGAGTGGAATAATGTCAGAAAGCCCCAGATCTTCTTATCC
GACATTGCGGTCAGCAGCTGGCAGCTGTTTGACTGCAGGGGAGTATCCCCGGCCAAATGGCTGGATGTACCTGGAGCGGG
GGATTTCCGTATCATTGTATTTAACCAGGAAACACTCACCAGCCTCCCGCCGGGCAGGGAAAGTCAGGCTGTTCTTTTTG
ATCCTTCAGCATCTGCTCATGGTATTGACGGCAAAAATATTGTTCTCTTTGATATGCCAAAGGATCGGGACTCCCTGGCT
GCTTTACTGGCAGGGCATAAGCCGCACCGGATTTATGCCCACTTCCAGCAAAGGCAGAGCCATTTCTTCAGCACAAGGCC
ATCCAGGGAACACTTCAAATGGTTCTACGCCTTCCTTGCCCAAAGGGACTCCTTTGACCTTAGGGCCCACGGCGGACAGT
TAGCGAAGCAGCGGGGCTGGACGAAAGAAACGGTAGAATTCATGTCGCAGGTGTTTTTTGAATTAGAATTTGTTAAAATA
AACAATGGATTGATTACTCTCAATAAAAGTGTAAAAAAACGGGATCTGGGTGATTCTGTTGCCTACCGCCAAAAACAGGA
GCAGTTTGAGCTGGAGCAGGAACTGCTTTATTCCACATACCGTGAATTATATGATAAGTTTAATCAATTAATAGAAGATA
CCGCATTCCTTGAGGAGGAAAACAAACAATGGATTTGA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(309-439)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-764)

DHH family (DHH)

(83-226)

RecJ OB domain (RecJ_OB)

(456-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.942

99.236

0.545