Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   V1501_RS15320 Genome accession   NZ_CP143545
Coordinates   3020447..3022861 (-) Length   804 a.a.
NCBI ID   WP_409289438.1    Uniprot ID   -
Organism   Peribacillus sp. SCS-37     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3015447..3027861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1501_RS15305 (V1501_15305) alaS 3015690..3018323 (-) 2634 WP_409289434.1 alanine--tRNA ligase -
  V1501_RS15310 (V1501_15310) - 3018661..3019770 (-) 1110 WP_409289436.1 AI-2E family transporter -
  V1501_RS15315 (V1501_15315) - 3020027..3020221 (-) 195 WP_409293397.1 hypothetical protein -
  V1501_RS15320 (V1501_15320) recD2 3020447..3022861 (-) 2415 WP_409289438.1 ATP-dependent RecD-like DNA helicase Machinery gene
  V1501_RS15325 (V1501_15325) - 3022885..3023559 (-) 675 WP_409289440.1 tetratricopeptide repeat protein -
  V1501_RS15330 (V1501_15330) mnmA 3023642..3024757 (-) 1116 WP_409289442.1 tRNA 2-thiouridine(34) synthase MnmA -
  V1501_RS15335 (V1501_15335) - 3024779..3025924 (-) 1146 WP_409289444.1 cysteine desulfurase family protein -
  V1501_RS15340 (V1501_15340) cymR 3026169..3026588 (-) 420 WP_409289446.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 804 a.a.        Molecular weight: 90492.56 Da        Isoelectric Point: 5.0017

>NTDB_id=929512 V1501_RS15320 WP_409289438.1 3020447..3022861(-) (recD2) [Peribacillus sp. SCS-37]
MLQQDSLNLFADGDKLFMKGRHLVTIFHNEQNLYSVVRIRLDETNLEYDEKEAVVTGYFPRIHEHETYIFFGQMKDHPKF
GQQFHVEHFRKDMPHTRDGIINYLSSELFKGIGKKTAESIVDTLGENAISRILESPSLLDTIPKLNPDKAKDLYDNLMEH
QGLEKVIISLNQLGFGPQLSMRIYQVYKHETLSVIQKNPYQLVEDIEGVGFGRADELGFQVGIAGNHEDRIKAACLYTLE
NDCLQEGHVFLETEHLLRRVKALLEENKRDVIEYTNISAEIIKLGEEGKVIVEDERIYTPSLYFSEGGLAGKIEKILEQE
EYEDQFPESEFLLALGKLEERIEVEYAPAQKDAIQTALMSPMLILTGGPGTGKTTVIKGIVELYSELHGASLDPGDYKKE
EPFPFVLAAPTGRAAKRMTESTGLPAVTIHRLLGWNGTGEFTHNENNPIGGKILIIDEMSMVDTWLAYQLFKALPEHIQV
ILVGDEDQLPSVGPGQVLKDLLRSGMVPTVQLQHIYRQDDGSSIISLAHEIKQGRLPGDIRSQQPDRSFFPCNAAQIAEV
VEKVVKNAKKKGYSARDIQVLAPMYRGPAGIDRLNVLIQGILNPNEDGKKRELSFGDVTYRVGDKVLQLVNQPESSVYNG
DIGQIVAILYAKENTEKQDMVIVSFDGLEITYTKSDLSQITLAYCCSIHKAQGSEFPIVIMPVVKSYYRMLRRNLIYTGI
TRSRKFLILCGEEEALRLGVERNNELGRKTTLCERLEKTMAEKEVPAVIADESQNIIASMMSADPMIGMGELTPYDFMSV
EKIQ

Nucleotide


Download         Length: 2415 bp        

>NTDB_id=929512 V1501_RS15320 WP_409289438.1 3020447..3022861(-) (recD2) [Peribacillus sp. SCS-37]
GTGCTTCAGCAGGATTCATTAAATCTATTTGCAGATGGTGACAAATTGTTCATGAAGGGACGGCATCTGGTCACCATCTT
TCATAACGAGCAGAATCTTTATTCAGTAGTCCGGATCCGCCTGGACGAAACCAATCTGGAATATGATGAAAAAGAAGCGG
TCGTCACCGGATACTTTCCCCGAATCCACGAGCATGAGACTTATATCTTTTTTGGCCAGATGAAGGACCATCCAAAGTTC
GGGCAGCAATTTCATGTGGAGCATTTCAGGAAGGATATGCCCCATACACGCGATGGGATCATCAATTACTTATCCAGTGA
GCTTTTTAAAGGAATCGGCAAAAAAACCGCAGAGAGCATTGTTGACACATTAGGTGAAAATGCCATCTCCCGCATCCTGG
AAAGTCCTTCACTACTGGATACAATTCCTAAGCTGAACCCGGATAAAGCCAAGGACCTATATGACAATCTCATGGAGCAT
CAGGGGCTGGAGAAGGTGATCATCAGCCTCAATCAGCTCGGCTTCGGGCCGCAGCTGTCCATGCGCATATACCAGGTCTA
TAAACATGAAACGCTGTCGGTGATACAAAAGAATCCATACCAGCTTGTCGAGGATATAGAGGGTGTCGGCTTCGGGCGCG
CAGATGAGCTGGGCTTTCAGGTTGGGATCGCCGGCAATCATGAAGACCGGATCAAGGCAGCCTGTCTGTATACTCTTGAA
AATGACTGCCTTCAGGAAGGCCATGTTTTTCTTGAAACGGAGCATCTTCTCCGGCGCGTCAAAGCCCTGCTTGAGGAAAA
TAAGCGGGATGTAATTGAATATACCAATATATCCGCTGAAATCATTAAGCTTGGTGAAGAAGGCAAGGTCATTGTGGAGG
ATGAGCGGATATATACACCTTCCCTATACTTTTCAGAGGGAGGCCTCGCCGGCAAGATTGAGAAAATACTGGAACAGGAA
GAGTATGAAGATCAATTTCCTGAATCTGAATTCCTGCTGGCGCTGGGCAAGCTTGAAGAGCGGATTGAAGTGGAGTATGC
CCCTGCCCAAAAAGATGCCATTCAGACTGCATTGATGTCCCCTATGCTGATTCTCACCGGCGGTCCGGGGACAGGAAAAA
CTACAGTAATTAAAGGCATCGTGGAATTGTACTCAGAGCTGCACGGAGCATCACTTGATCCGGGGGATTATAAAAAGGAA
GAGCCCTTCCCGTTTGTCCTTGCTGCGCCTACCGGGCGTGCGGCCAAAAGGATGACCGAATCAACCGGACTGCCTGCCGT
TACCATCCACCGCCTTCTCGGCTGGAACGGAACAGGAGAGTTCACTCATAATGAAAACAATCCAATCGGCGGAAAGATTC
TGATCATTGATGAGATGTCCATGGTAGATACCTGGCTCGCGTATCAGCTGTTCAAGGCGCTGCCTGAACATATTCAGGTT
ATTCTCGTGGGGGATGAGGATCAGCTGCCATCGGTCGGACCGGGTCAGGTTTTGAAGGATCTGCTGCGCTCGGGCATGGT
ACCGACTGTGCAGCTTCAGCATATATACCGACAGGACGATGGGTCTTCCATCATCAGCCTCGCTCATGAAATTAAGCAGG
GAAGGCTGCCTGGCGATATCCGCAGCCAGCAGCCGGACCGCTCCTTCTTTCCGTGCAATGCCGCCCAGATTGCAGAAGTG
GTTGAAAAGGTGGTTAAAAACGCCAAGAAAAAGGGCTATTCAGCCCGCGATATCCAGGTGCTTGCCCCTATGTACCGGGG
ACCTGCGGGAATTGACAGGCTGAATGTCCTGATTCAAGGGATATTGAACCCGAATGAAGACGGCAAAAAGCGGGAGCTCT
CGTTCGGTGATGTTACCTACAGGGTCGGGGACAAGGTGCTGCAGCTTGTAAACCAGCCGGAAAGCAGTGTCTACAACGGG
GACATCGGCCAGATTGTGGCCATCCTATATGCAAAGGAGAACACAGAAAAGCAGGATATGGTTATTGTATCCTTTGATGG
TCTAGAGATTACGTATACCAAATCCGATCTCTCGCAGATTACCCTTGCCTACTGCTGTTCCATTCACAAGGCACAGGGAA
GCGAGTTCCCGATCGTCATCATGCCTGTGGTTAAGAGCTATTACAGGATGCTGAGGAGGAATTTGATTTATACAGGAATC
ACAAGGAGCAGAAAATTTCTCATACTCTGCGGGGAGGAAGAAGCCCTGCGGCTTGGTGTAGAGAGAAATAATGAACTGGG
GCGGAAAACGACTCTCTGTGAACGACTGGAAAAAACGATGGCCGAAAAAGAGGTTCCCGCCGTTATTGCAGATGAAAGCC
AGAATATAATTGCATCAATGATGTCTGCCGACCCGATGATAGGCATGGGTGAGCTGACTCCTTATGATTTCATGAGCGTC
GAAAAAATACAATAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(683-730)

AAA domain (AAA_30)

(346-537)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-250)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-665)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

61.294

98.01

0.601