Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   V1499_RS15490 Genome accession   NZ_CP143543
Coordinates   3057591..3059957 (-) Length   788 a.a.
NCBI ID   WP_409270776.1    Uniprot ID   -
Organism   Neobacillus sp. SCS-31     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3052591..3064957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1499_RS15475 (V1499_15475) dtd 3054135..3054578 (-) 444 WP_409270773.1 D-aminoacyl-tRNA deacylase -
  V1499_RS15480 (V1499_15480) - 3054590..3056788 (-) 2199 WP_409270774.1 RelA/SpoT family protein -
  V1499_RS15485 (V1499_15485) - 3057088..3057600 (-) 513 WP_409270775.1 adenine phosphoribosyltransferase -
  V1499_RS15490 (V1499_15490) recJ 3057591..3059957 (-) 2367 WP_409270776.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  V1499_RS15495 (V1499_15495) - 3060648..3060956 (-) 309 WP_409270777.1 hypothetical protein -
  V1499_RS15500 (V1499_15500) secDF 3061061..3063322 (-) 2262 WP_409270778.1 protein translocase subunit SecDF -
  V1499_RS15505 (V1499_15505) - 3063511..3063846 (-) 336 WP_409270779.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 87315.94 Da        Isoelectric Point: 4.9348

>NTDB_id=929471 V1499_RS15490 WP_409270776.1 3057591..3059957(-) (recJ) [Neobacillus sp. SCS-31]
MLNSRTRWIVRESNESTANKLAAELNISHLVSSMLVNRGLDTVEAARPFLFGGEKFHDPFLLKGMDLAVSRIKRAIDSQE
PVLIYGDYDADGVSSTTVLMITLQELGANVGYYIPDRFTEGYGPNEAAFRKAAENGVKLIITVDTGISGVHEAEVARELG
VDLIITDHHEPGPVLPDALAIIHPKLPDSIYPFRDLAGVGVAFKLAHALYGQVPDHLLEIAAIGTIADLVSLKGENRLIA
KAGIDRLKVTENIGIKAILKCAGVNPSAINEETIGFTLAPRINAVGRLEHASMAVKLLLTEDRTEADVLAQEMDGLNRER
QAIVQEITEEAILQVDRDFPPDENKVLVVGKEGWNAGVIGIVASRLVEKYYRPVIVLSYDIEKGLAKGSARSIPGFDLFK
NLSECRDILPHFGGHPMAAGMTLKLEDVDGLRFRLNELAAGQMRDEDFIPVMQLDAEISISEVNLSVLEEVLLLAPFGMD
NPKPKISIEDVSISTLRRIGSDSSHLKMTLSNGEASLDGIGFGLGPLADHISPSSKIAVAGELSINEWNNIRKPQLMLQD
LAIRNWQLFDYRGARTISAINGKLPDGKKTFIVFHEENLAEVEKQLGGNDILHIRTVEEASAARINGESIVFVDLPPSKE
VIADLLDGKMPARIYAVFYQETSDFFSTMPNRDHFKWYYAFLLKNSPFDIGRYGSQLARKKGWTKETIDFMSEVFFELEF
VTIKNGLISVLKPTSKRDLTESVAYQKKHAHFALERDLLYSSYEQLRSWFSEILAEPVENEEALKEWI

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=929471 V1499_RS15490 WP_409270776.1 3057591..3059957(-) (recJ) [Neobacillus sp. SCS-31]
TTGCTGAATTCAAGAACGAGATGGATTGTCCGCGAATCCAACGAAAGCACTGCAAATAAATTAGCGGCGGAGTTAAATAT
ATCTCACCTTGTTTCCTCAATGCTTGTTAACCGGGGGCTGGATACTGTTGAAGCCGCGCGGCCTTTTTTATTTGGCGGGG
AAAAATTTCATGACCCGTTCCTGCTGAAGGGAATGGATCTGGCGGTCTCGCGAATCAAAAGGGCGATTGACAGCCAGGAG
CCGGTTTTGATATATGGCGATTATGATGCCGATGGCGTTAGCAGCACCACGGTCTTAATGATTACGTTACAAGAGTTGGG
CGCGAACGTCGGCTATTACATACCTGACAGGTTTACAGAAGGATACGGACCGAATGAAGCTGCCTTCAGGAAAGCGGCGG
AAAATGGAGTTAAGCTAATTATCACAGTGGATACTGGTATTTCCGGCGTCCATGAAGCGGAAGTTGCCAGGGAACTTGGT
GTCGATTTAATTATTACGGATCATCACGAACCAGGGCCCGTTCTTCCGGATGCGCTTGCCATCATCCATCCAAAACTACC
GGACAGCATTTACCCGTTCAGGGACCTTGCTGGTGTCGGCGTTGCTTTCAAGCTCGCTCATGCCCTGTACGGCCAGGTAC
CGGATCATCTGCTTGAAATCGCCGCTATCGGTACCATTGCCGACCTTGTTTCCCTGAAAGGGGAAAACAGGCTGATTGCC
AAAGCGGGAATTGACAGGCTCAAGGTAACCGAAAACATCGGAATCAAGGCAATCTTAAAATGCGCCGGGGTTAATCCGTC
GGCAATAAACGAAGAAACAATCGGTTTTACACTTGCTCCAAGAATCAATGCTGTCGGCAGGCTCGAGCATGCGAGCATGG
CCGTTAAACTGCTGTTGACGGAAGATAGAACGGAAGCGGATGTGCTTGCTCAGGAAATGGACGGGCTTAATCGGGAACGG
CAGGCAATTGTCCAGGAAATTACGGAAGAAGCAATCCTCCAGGTCGATCGTGACTTTCCGCCTGATGAGAATAAAGTGCT
TGTTGTCGGTAAGGAAGGCTGGAATGCGGGGGTTATTGGAATTGTCGCGTCCAGGCTTGTCGAAAAGTATTACAGGCCTG
TAATTGTCCTTAGTTATGATATAGAAAAAGGCCTTGCGAAAGGTTCTGCAAGGAGCATTCCCGGTTTTGACCTCTTCAAA
AACTTGTCGGAATGCAGGGATATCCTTCCTCATTTCGGTGGACACCCGATGGCAGCCGGAATGACATTGAAACTTGAAGA
CGTCGATGGCTTGCGCTTTCGGCTAAACGAACTAGCGGCGGGACAGATGAGAGACGAAGACTTCATCCCTGTGATGCAGC
TTGATGCGGAAATTTCAATTTCAGAGGTGAATCTCTCAGTCCTTGAGGAGGTGCTTTTGCTCGCACCGTTTGGGATGGAC
AACCCTAAACCAAAAATTTCGATTGAGGACGTATCTATCTCCACACTTCGAAGGATTGGGAGCGACAGTAGCCATTTAAA
GATGACATTGTCGAACGGGGAAGCTTCGCTTGACGGCATCGGATTTGGGCTCGGGCCGTTGGCGGACCACATTTCTCCTT
CTTCAAAAATTGCCGTCGCGGGGGAGCTGTCCATTAATGAATGGAACAATATCCGAAAGCCCCAGCTAATGCTTCAAGAC
CTTGCCATCAGGAACTGGCAACTGTTTGATTATAGGGGTGCAAGGACTATTTCCGCTATAAACGGAAAGCTTCCGGATGG
TAAAAAAACGTTTATCGTTTTTCATGAGGAAAATCTGGCGGAGGTTGAAAAGCAGCTGGGAGGAAACGACATTCTCCATA
TCCGGACAGTTGAAGAAGCCAGCGCAGCCAGGATAAACGGTGAAAGCATCGTCTTTGTTGACCTACCGCCTTCGAAGGAG
GTTATCGCTGACCTGCTGGACGGTAAAATGCCCGCAAGGATTTACGCGGTATTTTACCAAGAAACAAGCGATTTTTTCAG
CACAATGCCGAATAGGGATCATTTCAAATGGTACTACGCCTTCCTGCTGAAAAACTCCCCGTTTGATATCGGCCGTTATG
GCAGCCAGCTTGCTAGGAAAAAAGGCTGGACAAAAGAGACGATTGATTTTATGTCCGAGGTGTTTTTTGAGCTGGAGTTT
GTTACAATAAAAAATGGATTGATTTCCGTTTTAAAGCCAACATCAAAGCGTGATCTGACCGAGTCGGTTGCGTACCAAAA
GAAGCATGCACATTTCGCTCTTGAAAGGGATTTGCTCTACTCATCCTATGAGCAGCTTAGGAGTTGGTTCTCCGAAATCC
TGGCGGAGCCCGTTGAAAATGAGGAGGCACTAAAGGAATGGATTTAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(567-770)

DHH family (DHH)

(82-225)

DHHA1 domain (DHHA1)

(315-437)

RecJ OB domain (RecJ_OB)

(455-560)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.926

99.746

0.528