Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   V1499_RS15410 Genome accession   NZ_CP143543
Coordinates   3038250..3040697 (-) Length   815 a.a.
NCBI ID   WP_409270764.1    Uniprot ID   -
Organism   Neobacillus sp. SCS-31     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3033250..3045697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1499_RS15390 (V1499_15390) - 3035800..3036864 (-) 1065 WP_409276311.1 AI-2E family transporter -
  V1499_RS15395 (V1499_15395) - 3036992..3037357 (-) 366 WP_409270761.1 hypothetical protein -
  V1499_RS15400 (V1499_15400) - 3037503..3037694 (-) 192 WP_409270762.1 hypothetical protein -
  V1499_RS15405 (V1499_15405) - 3037707..3038183 (-) 477 WP_409270763.1 PRC-barrel domain-containing protein -
  V1499_RS15410 (V1499_15410) recD2 3038250..3040697 (-) 2448 WP_409270764.1 ATP-dependent RecD-like DNA helicase Machinery gene
  V1499_RS15415 (V1499_15415) - 3040737..3041402 (-) 666 WP_409270765.1 tetratricopeptide repeat protein -
  V1499_RS15420 (V1499_15420) mnmA 3041555..3042712 (-) 1158 WP_409270766.1 tRNA 2-thiouridine(34) synthase MnmA -
  V1499_RS15425 (V1499_15425) - 3042821..3043963 (-) 1143 WP_409276312.1 cysteine desulfurase family protein -
  V1499_RS15430 (V1499_15430) cymR 3044007..3044426 (-) 420 WP_316571899.1 cysteine metabolism transcriptional regulator CymR -
  V1499_RS15435 (V1499_15435) - 3044423..3045103 (-) 681 WP_409270767.1 YczE/YyaS/YitT family protein -

Sequence

Protein


Download         Length: 815 a.a.        Molecular weight: 91448.81 Da        Isoelectric Point: 4.6675

>NTDB_id=929470 V1499_RS15410 WP_409270764.1 3038250..3040697(-) (recD2) [Neobacillus sp. SCS-31]
MDQQNSLDLFSEQGKFVKGRPIVTIFHNETNLYTVARIRVDDTNDTYEDREAVVTGYFPKLHDQETYLFYGEFKDHPKFG
LQFQATHFRKDIPQSKQGVIAYLSSEIFKGIGRKTAESIVEVLGENAISRILNEPSLLDSIPRLPPDKAKMLYDTLMEHQ
GLEQVMVALNQYGFGPQLSMKIYQVYKEATIDIIQKNPYQLVEDIEGIGFGRADELGYQLGISGNHPDRIKAACLYTLET
ESMQAGHVYLEARDLLEKVKALLEENQRDVIGYNDITTELIKLEEEGKVAGEGQRVYLPSLYFSEKGLVTNIKRILEQKD
YSAQFPESEFLLALGELEERLGVEYAPSQKEAIQTAIQSPMMILTGGPGTGKTTVIKGIVELYAELHGCSLDPKDYMKKD
EAFPILLAAPTGRAAKRMSESTGLPAVTIHRLLGFNGSEGFSHDEESSLEGKLLIVDETSMVDVWLANQLFKALPESIQV
ILVGDEDQLPSVGPGQVLKDLLRSERIPTVRLTDIYRQAEGSSIIRLAHEIKNGSLPADLSAQQPDRSFIKCNGNQLAQV
VEKVAANARKKGYHARDIQVLAPMYKGPAGIDRLNVILQELFNPNPDGKRKELAFGDVKYRIGDKVLQLVNQPESNVFNG
DIGEIVSIFYAKENTEKQDMAIISFDGIEVTYTRQDLNQITHAYCCSVHKAQGSEFPIVILPITRSYYRMLRRNLIYTAI
TRSRQFLILCGEEDAFRLGVERNDEQTRQTTLAEKLTEAIELDSPESSAGDGTDFAAENEVFEERVPYGRASLEEVLMDT
DPLIGMENVTPYDFM

Nucleotide


Download         Length: 2448 bp        

>NTDB_id=929470 V1499_RS15410 WP_409270764.1 3038250..3040697(-) (recD2) [Neobacillus sp. SCS-31]
ATGGACCAACAGAATTCTCTAGACCTGTTTTCAGAGCAGGGGAAGTTTGTAAAAGGAAGGCCGATCGTAACGATTTTTCA
CAATGAAACGAACCTGTATACGGTCGCAAGGATCAGGGTTGATGATACGAATGACACGTATGAAGACAGGGAAGCCGTGG
TCACCGGTTATTTCCCGAAGCTACATGACCAGGAAACCTATCTTTTCTACGGTGAATTCAAGGACCATCCGAAATTTGGC
CTTCAATTTCAGGCTACCCATTTCCGTAAGGATATCCCTCAGTCCAAACAAGGGGTCATTGCCTATTTGTCGAGTGAAAT
ATTCAAGGGAATCGGCCGAAAAACGGCTGAAAGCATTGTGGAAGTCCTTGGCGAGAATGCAATTTCCCGGATTTTGAACG
AACCCTCTCTTCTTGACTCCATCCCAAGGCTGCCGCCGGACAAGGCGAAAATGCTCTATGATACGCTGATGGAGCACCAG
GGGCTTGAACAGGTTATGGTAGCCCTCAACCAATATGGGTTCGGGCCGCAGTTGTCTATGAAAATCTACCAGGTTTACAA
AGAAGCGACAATTGACATTATCCAGAAGAATCCTTACCAGCTTGTTGAGGATATTGAGGGCATCGGCTTCGGCCGGGCGG
ATGAGCTTGGATACCAGCTTGGTATATCTGGAAACCATCCAGACAGGATCAAAGCCGCGTGCCTCTATACGCTTGAAACC
GAAAGCATGCAGGCTGGCCATGTCTATTTGGAAGCCCGTGACTTGTTGGAAAAAGTAAAGGCGCTTCTAGAGGAAAATCA
GCGGGATGTCATCGGCTATAACGATATAACCACCGAGCTGATCAAACTAGAGGAAGAAGGAAAAGTGGCTGGTGAAGGCC
AGCGCGTCTATTTGCCATCCCTTTATTTTTCTGAAAAAGGCCTTGTGACAAATATAAAACGGATTCTCGAACAGAAAGAT
TACAGCGCCCAGTTTCCGGAGTCCGAATTCCTGCTCGCTCTTGGCGAGCTTGAGGAACGTCTTGGAGTTGAGTACGCCCC
ATCACAAAAGGAAGCGATTCAGACTGCGATCCAGTCACCAATGATGATTCTGACAGGCGGGCCTGGAACCGGGAAAACGA
CTGTCATTAAAGGGATTGTTGAGCTTTATGCCGAACTACACGGCTGCTCGCTCGATCCTAAGGATTACATGAAAAAAGAT
GAAGCTTTTCCGATACTTCTCGCGGCGCCGACTGGAAGGGCCGCGAAGCGGATGAGCGAATCGACTGGCTTGCCGGCAGT
CACCATCCACAGGCTCCTTGGTTTCAATGGCAGCGAAGGATTCAGCCATGATGAAGAGTCGTCGCTTGAAGGAAAGCTTC
TAATCGTCGATGAAACATCCATGGTCGATGTTTGGCTAGCGAATCAGCTGTTCAAGGCGCTTCCGGAATCAATCCAGGTC
ATCCTTGTTGGCGATGAAGACCAGCTCCCTTCTGTCGGCCCTGGCCAGGTGCTGAAGGACTTGCTCCGTTCGGAACGGAT
CCCGACGGTCAGGCTGACGGATATTTACAGGCAGGCGGAAGGTTCATCCATCATCCGCCTCGCCCATGAAATTAAAAACG
GAAGCCTTCCAGCCGACCTTTCCGCGCAGCAGCCGGACAGGTCGTTCATCAAATGCAATGGAAACCAGCTTGCCCAGGTT
GTCGAAAAAGTCGCTGCCAATGCCCGGAAAAAAGGCTACCATGCCCGGGATATCCAAGTGCTGGCCCCGATGTATAAAGG
GCCAGCTGGAATCGACAGGCTCAATGTCATCCTCCAGGAATTATTCAATCCGAACCCTGATGGCAAGAGGAAAGAGCTTG
CGTTTGGCGATGTGAAATACAGAATCGGCGATAAGGTTCTGCAGCTTGTCAATCAGCCGGAAAGCAATGTATTTAATGGC
GATATCGGTGAAATTGTGTCGATTTTTTACGCGAAGGAAAATACCGAAAAACAGGATATGGCCATCATTTCCTTTGACGG
AATAGAAGTCACATATACCCGGCAGGATTTGAACCAAATCACGCATGCATATTGCTGTTCCGTCCATAAAGCGCAAGGAA
GCGAGTTTCCGATTGTCATCTTGCCGATTACCCGCAGCTACTACCGGATGCTGCGCAGGAACCTGATCTATACAGCGATT
ACCCGGAGCAGGCAGTTCCTTATCCTCTGCGGCGAGGAAGATGCGTTCCGGCTTGGAGTAGAACGGAATGATGAACAAAC
AAGGCAGACAACGCTTGCCGAAAAGCTAACGGAAGCAATCGAATTGGATTCGCCGGAAAGCAGCGCTGGGGATGGTACAG
ATTTTGCCGCTGAAAATGAGGTTTTTGAAGAGCGTGTCCCTTATGGCAGGGCGTCACTTGAAGAAGTGCTGATGGACACT
GATCCGCTTATCGGCATGGAAAACGTTACCCCTTATGATTTCATGTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(682-730)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-658)

AAA domain (AAA_30)

(345-552)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

61.472

100

0.615