Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   V1498_RS06030 Genome accession   NZ_CP143542
Coordinates   1211127..1213541 (+) Length   804 a.a.
NCBI ID   WP_409297524.1    Uniprot ID   -
Organism   Peribacillus sp. SCS-26     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1206127..1218541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1498_RS06010 (V1498_06010) cymR 1207450..1207869 (+) 420 WP_409289446.1 cysteine metabolism transcriptional regulator CymR -
  V1498_RS06015 (V1498_06015) - 1208063..1209208 (+) 1146 WP_409297519.1 cysteine desulfurase family protein -
  V1498_RS06020 (V1498_06020) mnmA 1209230..1210345 (+) 1116 WP_409297521.1 tRNA 2-thiouridine(34) synthase MnmA -
  V1498_RS06025 (V1498_06025) - 1210428..1211102 (+) 675 WP_409297523.1 tetratricopeptide repeat protein -
  V1498_RS06030 (V1498_06030) recD2 1211127..1213541 (+) 2415 WP_409297524.1 ATP-dependent RecD-like DNA helicase Machinery gene
  V1498_RS06035 (V1498_06035) - 1213955..1214149 (+) 195 WP_409299168.1 hypothetical protein -
  V1498_RS06040 (V1498_06040) - 1214491..1215600 (+) 1110 WP_409297526.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 804 a.a.        Molecular weight: 90499.40 Da        Isoelectric Point: 5.0842

>NTDB_id=929402 V1498_RS06030 WP_409297524.1 1211127..1213541(+) (recD2) [Peribacillus sp. SCS-26]
MLQQDSLNLFADGDKMFMKGRHLVTIFHNEQNLYSVVRIRLDETNLEYDEKEAVVTGYFPRIHEHETYIFFGTMKEHPKF
GQQFHVEHFRKDMPHTRDGIINYLSSELFKGIGKKTAESIVDTLGENAISRILESPSLLDTIPKLNPEKAKDLYDNLMEH
QGLEKVIISLNQLGFGPQLSMRIYQVYKHETLSVIQKNPYQLVEDIEGVGFGRADELGFQVGIAGNHEDRIKAACLYTLE
NDCLQEGHVFLETEHLLRRVKALLEENKRDVIEYTNISAEIIKLGEEGKIIVEDERIYTPSLYFSEGGLAGKIEKILEQE
DYEDQFPESEFLLALGNLEERIEVEYASAQKDAIQTALMSPMLILTGGPGTGKTTVIKGIVELYSELHGASLDPRDYKKE
EPFPFVLAAPTGRAAKRMTESTGLPAVTIHRLLGWNGTGEFTHNENNPIGGKILIIDEMSMVDTWLANQLFKALPEHIQV
ILVGDEDQLPSVGPGQVLKDLLRSGKVPTVQLQHIYRQDDGSSIISLAHEIKQGRLPGDIRRQQPDRSFFPCNAAQIAEV
VEKVVKNAKKKGYSARDIQVLAPMYRGPAGIDRLNVLIQGILNPNEDGKKRELSFGDVTYRVGDKVLQLVNQPESSVYNG
DIGQIAAILYAKENTEKQDMVIVSFDGLEITYTKSDLSQITLAYCCSIHKAQGSEFPIVIMPVVKSYYRMLRRNLIYTGI
TRSRKFLILCGEEEALRLGIERNNELGRKTTLCERLEKTMAEKEVPSADTDDSQNMIASMMSADPMIGMGGLTPYDFMSG
EKIQ

Nucleotide


Download         Length: 2415 bp        

>NTDB_id=929402 V1498_RS06030 WP_409297524.1 1211127..1213541(+) (recD2) [Peribacillus sp. SCS-26]
GTGCTTCAGCAGGATTCATTAAATCTATTTGCAGACGGTGACAAAATGTTCATGAAGGGACGGCATCTGGTCACCATCTT
TCATAACGAGCAGAATCTTTATTCAGTTGTCCGGATCCGCCTGGACGAAACCAACCTGGAATATGATGAAAAAGAAGCGG
TCGTCACCGGATACTTTCCCCGAATCCACGAGCACGAGACATATATCTTTTTTGGCACGATGAAGGAGCATCCCAAGTTT
GGGCAGCAATTTCATGTGGAGCATTTCAGGAAGGATATGCCCCATACACGCGATGGAATTATCAATTATTTATCCAGTGA
GCTTTTCAAGGGGATCGGAAAGAAAACCGCAGAGAGCATTGTTGACACACTTGGAGAAAATGCCATCTCCCGCATCCTGG
AAAGCCCTTCCCTTCTTGATACAATTCCCAAGCTGAACCCGGAAAAAGCCAAAGACCTATATGACAATCTCATGGAGCAC
CAGGGGCTGGAGAAGGTAATCATCAGCCTGAATCAGCTTGGCTTCGGGCCGCAGCTTTCCATGCGTATATACCAGGTCTA
TAAACATGAAACGCTGTCTGTTATACAAAAGAATCCATACCAGCTTGTCGAGGACATAGAGGGTGTCGGCTTCGGGCGCG
CGGATGAACTGGGCTTCCAGGTTGGGATTGCCGGCAATCATGAGGACCGGATTAAGGCAGCCTGTCTGTATACTCTTGAA
AATGACTGCCTTCAGGAAGGCCATGTTTTTCTTGAAACGGAGCATCTTCTCCGGCGCGTAAAAGCCCTGCTTGAGGAAAA
TAAGCGGGATGTGATTGAATATACCAATATTTCAGCTGAAATCATTAAGCTTGGTGAAGAAGGCAAGATCATTGTGGAGG
ACGAGCGGATATATACACCTTCCCTCTACTTCTCAGAGGGAGGACTGGCCGGGAAAATAGAGAAAATCCTGGAACAGGAA
GACTATGAAGATCAATTCCCTGAATCTGAATTCCTGCTGGCGCTGGGAAATCTTGAAGAGCGGATTGAGGTAGAGTATGC
CTCTGCCCAAAAAGATGCCATTCAAACTGCATTGATGTCCCCCATGCTGATTCTCACTGGCGGCCCGGGGACAGGAAAAA
CTACAGTCATTAAAGGCATCGTGGAATTGTATTCAGAGCTCCACGGGGCATCGCTTGATCCCAGGGATTATAAAAAGGAA
GAGCCCTTCCCATTTGTCCTTGCTGCGCCTACCGGGCGTGCCGCCAAAAGGATGACTGAATCAACCGGACTGCCTGCCGT
TACTATTCACCGACTTCTCGGCTGGAACGGAACAGGCGAGTTCACTCATAATGAAAACAATCCAATCGGCGGAAAGATTC
TTATCATAGATGAAATGTCCATGGTAGATACCTGGCTCGCTAATCAGCTGTTCAAGGCACTGCCTGAACATATTCAGGTT
ATTCTTGTTGGGGATGAGGATCAGCTTCCATCGGTCGGACCGGGTCAGGTTTTGAAGGATCTGCTGCGCTCGGGCAAGGT
GCCGACTGTGCAGCTTCAGCATATATACCGTCAGGACGATGGATCTTCCATCATAAGCCTTGCCCATGAAATCAAGCAGG
GAAGGCTGCCAGGCGATATCCGCAGGCAACAGCCGGACCGCTCGTTCTTTCCGTGCAATGCCGCACAGATTGCAGAAGTG
GTTGAAAAGGTGGTTAAAAACGCCAAGAAAAAAGGCTATTCAGCCCGCGATATACAGGTACTTGCCCCCATGTACCGGGG
ACCTGCCGGGATTGACAGGCTGAATGTCCTGATTCAGGGGATTTTGAACCCGAATGAAGACGGCAAAAAGAGGGAGCTCT
CGTTCGGAGATGTTACTTACAGGGTCGGGGACAAAGTGCTGCAGCTTGTAAACCAGCCGGAAAGCAGTGTCTATAACGGG
GACATCGGCCAGATTGCGGCCATCCTATATGCTAAAGAGAACACGGAAAAGCAGGATATGGTTATTGTATCCTTTGACGG
TCTTGAGATAACGTATACCAAATCCGATCTATCGCAGATTACCCTTGCCTACTGCTGTTCCATTCACAAGGCACAGGGAA
GCGAATTTCCGATCGTCATCATGCCTGTGGTTAAGAGCTATTACAGGATGCTTAGGAGGAATTTGATTTATACCGGAATC
ACAAGGAGCAGAAAGTTTCTCATACTCTGCGGGGAGGAAGAAGCCCTGCGGCTCGGGATAGAGAGAAATAATGAACTGGG
GCGGAAAACGACCCTCTGTGAAAGACTGGAAAAAACGATGGCCGAAAAAGAAGTTCCGTCTGCTGATACAGATGACAGCC
AGAATATGATTGCATCTATGATGTCTGCCGACCCGATGATCGGCATGGGCGGGCTGACTCCTTATGATTTTATGAGCGGC
GAAAAAATACAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-250)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(683-730)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-665)

AAA domain (AAA_30)

(346-537)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

61.294

98.01

0.601