Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   V1498_RS05955 Genome accession   NZ_CP143542
Coordinates   1193395..1195752 (+) Length   785 a.a.
NCBI ID   WP_409297503.1    Uniprot ID   -
Organism   Peribacillus sp. SCS-26     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1188395..1200752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1498_RS05940 (V1498_05940) - 1189889..1190188 (+) 300 WP_409297499.1 post-transcriptional regulator -
  V1498_RS05945 (V1498_05945) secDF 1190413..1192668 (+) 2256 WP_409297501.1 protein translocase subunit SecDF -
  V1498_RS05950 (V1498_05950) - 1192985..1193332 (+) 348 WP_409297502.1 lipopolysaccharide assembly LapA domain-containing protein -
  V1498_RS05955 (V1498_05955) recJ 1193395..1195752 (+) 2358 WP_409297503.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  V1498_RS05960 (V1498_05960) - 1195743..1196255 (+) 513 WP_409289464.1 adenine phosphoribosyltransferase -
  V1498_RS05965 (V1498_05965) - 1196589..1198784 (+) 2196 WP_409297505.1 RelA/SpoT family protein -
  V1498_RS05970 (V1498_05970) dtd 1198796..1199242 (+) 447 WP_409297507.1 D-aminoacyl-tRNA deacylase -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 87386.72 Da        Isoelectric Point: 5.0567

>NTDB_id=929401 V1498_RS05955 WP_409297503.1 1193395..1195752(+) (recJ) [Peribacillus sp. SCS-26]
MLKSKTRWILKDANTERVQELAEQLKITPLVAKLLVNRGLEDADSARSFLFSEDEPFHDPFLFNDMEKAVERIHRAIQDK
EKILIFGDYDADGVTSTSVLMITLKQLGADAAYYIPNRFTEGYGPNIPAFERAVKEGASLIITVDTGISAAAEADFLKNA
GIDYIITDHHEPGPVLPSALALIHPKIPGSTYPFKELAGVGVALKLAHALTGRLPKELLELAAIGTIADLVPLFGENRLI
AAAGIRQLQKTDRPGLKAILKKANGRQDSVNEETIGFGIAPRINAAGRLGSANPAVELLLTRDGEEAEILASEIDQMNKE
RQAIVSQTVEEAVKEVEANFPASDHKVIIVGKSGWNPGIVGIVASKLVDKFYRPAIILSFDEEKGIAKGSARSIQGFDLF
ANLSKCRDILPHFGGHPMAAGMTLQLSDVGSLRMRMNELAQEEMTEEDFIPITNLDSEITLDEISLAAIEEMTMLSPFGM
GNPKPRVLIDSVPLESIRKIGADKNHLKLMLNDGRAVLDGVGFGLGEQFDHISPFSKVSVIGELSVNEWNNVRKPQIFLS
DIAVSSWQLFDCRGISPAKWLDVPGSEDFRFIVFNQESLTSLPPGRESQAVLFDPVSSAPEIDGENIVLFDMPQSRDSLA
ALLSGHKPHRIYAHLQQRQSHFFSTRPSREHFKWFYAFLAQRESFDLRAHGGQLAKQRGWTKETVEFMSQVFFELEFVKI
NNGLITLNKSVKKRDLGDSVAYRQKQEQFELEQELLYSTYRELYDKFNQLIEETAFLEEENKQWI

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=929401 V1498_RS05955 WP_409297503.1 1193395..1195752(+) (recJ) [Peribacillus sp. SCS-26]
ATGCTTAAATCAAAAACTCGCTGGATCCTGAAAGATGCGAATACCGAGAGAGTGCAAGAATTAGCGGAACAGTTAAAAAT
CACACCTCTTGTAGCAAAATTATTAGTGAACCGTGGACTGGAAGATGCTGATTCGGCACGGTCTTTTTTATTTAGTGAAG
ATGAGCCCTTCCACGATCCCTTCCTTTTCAATGACATGGAAAAGGCTGTCGAGCGGATACATAGAGCGATTCAAGATAAA
GAAAAAATATTGATCTTCGGCGATTATGACGCAGATGGAGTCACCAGCACCTCAGTGTTGATGATCACCCTCAAACAGCT
GGGGGCAGATGCTGCCTATTATATTCCAAATAGATTCACAGAAGGCTACGGCCCCAATATTCCCGCATTTGAAAGAGCCG
TCAAAGAAGGAGCAAGCCTGATTATTACTGTTGATACAGGAATATCTGCCGCAGCTGAAGCGGATTTTCTTAAAAATGCC
GGCATAGACTATATCATTACGGATCACCATGAGCCTGGTCCGGTTCTTCCGTCTGCGCTTGCACTGATACATCCTAAAAT
TCCTGGCAGCACTTATCCATTCAAGGAACTGGCAGGAGTGGGGGTGGCACTCAAGCTTGCCCATGCACTGACCGGAAGGC
TGCCAAAGGAATTGCTGGAGCTTGCAGCCATCGGGACCATCGCTGACCTGGTTCCATTGTTTGGTGAGAACAGGCTGATT
GCCGCTGCAGGCATCAGACAGCTCCAAAAAACGGACCGGCCGGGCTTGAAGGCAATCCTAAAGAAGGCAAATGGCAGGCA
GGACTCTGTAAATGAGGAAACGATTGGATTTGGTATCGCCCCAAGGATCAATGCGGCCGGCCGGCTGGGAAGCGCAAATC
CTGCCGTCGAGCTGCTGCTTACACGTGACGGGGAAGAGGCTGAAATCCTTGCTTCTGAAATCGATCAAATGAATAAAGAA
CGCCAGGCGATTGTAAGCCAGACCGTTGAAGAAGCCGTGAAGGAAGTGGAAGCGAATTTCCCGGCAAGCGATCATAAAGT
AATCATTGTGGGAAAATCCGGCTGGAACCCGGGCATCGTAGGGATCGTAGCATCGAAGCTTGTGGACAAATTTTATCGTC
CGGCCATCATACTCAGCTTTGACGAGGAAAAAGGGATTGCCAAAGGTTCGGCGAGAAGCATCCAGGGCTTTGATTTATTC
GCGAACCTGTCAAAATGCCGGGATATTCTTCCGCATTTCGGCGGACATCCCATGGCTGCAGGAATGACTCTTCAGCTCAG
TGATGTGGGAAGCCTTAGAATGCGTATGAATGAACTTGCACAAGAAGAGATGACCGAAGAAGATTTCATTCCCATAACCA
ATCTGGACAGTGAAATAACCCTCGATGAAATTTCCCTTGCAGCCATTGAAGAAATGACCATGCTATCTCCTTTTGGGATG
GGAAATCCAAAGCCCAGGGTTCTGATTGATTCTGTTCCGCTCGAGTCAATCAGAAAAATAGGGGCAGACAAAAATCATCT
CAAGCTTATGCTGAATGATGGCAGGGCGGTGCTTGACGGAGTTGGATTCGGTCTTGGAGAACAATTTGACCATATCTCAC
CTTTTTCAAAAGTATCAGTCATTGGAGAACTGTCGGTCAATGAGTGGAATAATGTCAGAAAGCCCCAGATCTTCTTATCT
GACATAGCGGTCAGCAGCTGGCAGCTGTTTGACTGCAGGGGAATATCCCCGGCTAAATGGCTGGATGTACCTGGCTCGGA
GGATTTCCGTTTCATTGTGTTTAACCAGGAATCACTCACCAGCCTGCCGCCGGGCAGGGAAAGCCAGGCTGTTCTTTTTG
ATCCTGTATCATCTGCTCCTGAGATTGACGGGGAAAATATTGTTCTCTTTGATATGCCCCAGTCTCGAGACTCCCTGGCA
GCATTGCTCTCAGGGCATAAGCCGCACCGGATTTATGCACACTTGCAGCAAAGGCAGAGCCATTTCTTCAGCACAAGGCC
TTCCAGGGAACATTTCAAATGGTTCTACGCCTTCCTTGCCCAAAGGGAATCGTTTGACCTTCGGGCCCACGGCGGACAGC
TTGCCAAGCAGCGGGGCTGGACGAAAGAAACAGTAGAATTCATGTCGCAGGTGTTTTTTGAATTAGAATTTGTTAAAATA
AACAATGGATTGATTACTCTCAATAAAAGTGTAAAAAAACGGGATCTGGGTGATTCTGTTGCCTACCGCCAAAAACAGGA
GCAGTTTGAGCTGGAGCAGGAGCTGCTTTATTCCACATACCGTGAATTATATGATAAGTTTAATCAATTAATAGAAGAGA
CCGCATTCCTTGAGGAGGAAAACAAACAATGGATTTGA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(311-438)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-764)

DHH family (DHH)

(82-226)

RecJ OB domain (RecJ_OB)

(456-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

55.256

99.363

0.549