Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   V1497_RS13140 Genome accession   NZ_CP143541
Coordinates   2517658..2520018 (-) Length   786 a.a.
NCBI ID   WP_349407992.1    Uniprot ID   -
Organism   Pseudalkalibacillus sp. SCS-8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2512658..2525018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1497_RS13125 (V1497_13145) dtd 2514228..2514683 (-) 456 WP_349407989.1 D-aminoacyl-tRNA deacylase -
  V1497_RS13130 (V1497_13150) - 2514699..2516891 (-) 2193 WP_414703565.1 RelA/SpoT family protein -
  V1497_RS13135 (V1497_13155) - 2517140..2517652 (-) 513 WP_349407991.1 adenine phosphoribosyltransferase -
  V1497_RS13140 (V1497_13160) recJ 2517658..2520018 (-) 2361 WP_349407992.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  V1497_RS13145 (V1497_13165) - 2520085..2520420 (-) 336 WP_349407993.1 lipopolysaccharide assembly LapA domain-containing protein -
  V1497_RS13150 (V1497_13170) - 2520420..2521328 (-) 909 WP_349407994.1 cation diffusion facilitator family transporter -
  V1497_RS13155 (V1497_13175) secDF 2521842..2524076 (-) 2235 WP_349407995.1 protein translocase subunit SecDF -
  V1497_RS13160 (V1497_13180) - 2524161..2524445 (-) 285 WP_349407996.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 89329.67 Da        Isoelectric Point: 4.7504

>NTDB_id=929375 V1497_RS13140 WP_349407992.1 2517658..2520018(-) (recJ) [Pseudalkalibacillus sp. SCS-8]
MLNAKTRWHVTDVDQDRQNELVRHLDISPLVAGLLVNRGKYDIDEAATFLHIENAEFHDPLLLDGMEKAVNRIRQAIEQQ
EKILIFGDYDADGVSSTSVMIYTLRELNADFDYYIPNRFTEGYGPNEAAFRWAKEQGFSLIITVDTGISAIHEASVAREL
GLDLIITDHHEPQPELPDAFSIINPKKPGCPYPFKGLAGVGVAIKVAHALLEKPPVHLLDIACIGTIADLVPLVDENRLI
AKRGISRLQRTEKPGLQALLKLCGIKDQVLNAEHIGFGIGPRVNAAGRLDSADPAVDLFTTDDPEQAEMIAEEIDAMNKE
RQNLVNQMTKEAVQIVEQNYPPEENSALVIAKEGWNPGVIGIVASRLVEKFYRPTIVLSMDPEKGVAKGSARSINGFDMF
ANLSECRDILPHFGGHPMAAGMTLDLEHVDELRNRLNELAEEKLVPEDFIPITSIDLKCSVDDISLEVIEELQALEPFGV
ENPKPKFLIEPCKLKEFRRIGSDSKHLKLALQGSNTQLDVIGFHFGEVFEDITPNASLSVVGELSINEWNGFRKPQLMLQ
DIAIKEKQLFDYRGVKNLKDRLNLLDPEKVRLLAFQEQTVEQLRLGDWQDVIYRVGEDETLNDLDIEGQYLIILDLPSSK
RQLKELMLAGSTAERIYTVFHHEEDHYFNPIPSRESFKWYYAFLRKQGRFNYKEKAKELAAYKGWTKESIYFMTEVFFEL
EFVTIDNGVVTVADQPMKRPLTDSRTYRRKQEQTSLENDLCYSSYRDLKRWFFEKENDGVRFEEAH

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=929375 V1497_RS13140 WP_349407992.1 2517658..2520018(-) (recJ) [Pseudalkalibacillus sp. SCS-8]
ATGTTGAATGCAAAAACGAGGTGGCATGTCACTGACGTCGACCAGGACAGACAAAATGAACTGGTCCGACATTTGGACAT
ATCACCACTCGTTGCTGGATTACTTGTGAATCGAGGCAAATACGATATCGATGAAGCAGCAACGTTTTTACATATTGAAA
ATGCAGAATTCCATGATCCTTTGTTATTAGATGGCATGGAAAAAGCAGTGAATCGTATACGGCAAGCGATTGAACAGCAA
GAAAAGATATTGATCTTCGGTGACTATGATGCAGATGGAGTAAGTAGTACCTCTGTGATGATTTATACGTTACGAGAATT
GAACGCTGACTTCGATTATTACATACCCAACCGCTTCACCGAAGGATATGGTCCGAATGAAGCCGCCTTCCGTTGGGCGA
AGGAGCAAGGCTTTTCGCTGATCATCACGGTTGATACTGGTATTTCCGCAATCCACGAAGCCTCTGTAGCTAGAGAACTC
GGATTAGATCTGATCATTACGGACCATCACGAACCACAGCCAGAACTTCCTGATGCCTTTTCGATCATCAACCCGAAAAA
GCCCGGTTGTCCATATCCTTTTAAGGGCCTCGCTGGAGTCGGCGTTGCGATAAAGGTGGCACATGCATTACTAGAGAAAC
CGCCAGTCCACTTACTCGATATCGCATGTATCGGGACGATTGCGGATCTCGTTCCACTCGTGGACGAAAACCGCCTCATT
GCGAAAAGAGGAATCTCAAGACTCCAACGCACTGAAAAGCCGGGTTTGCAAGCTTTGCTGAAGCTTTGTGGAATTAAGGA
TCAAGTGTTGAATGCCGAACATATCGGGTTCGGAATTGGACCTAGGGTGAATGCAGCCGGCAGACTGGATTCAGCTGATC
CGGCGGTCGACTTATTTACGACGGATGACCCAGAACAGGCTGAAATGATTGCTGAAGAGATCGATGCAATGAATAAAGAA
AGACAAAACCTTGTCAACCAGATGACGAAAGAAGCGGTTCAAATTGTGGAACAGAACTACCCACCTGAGGAGAATTCTGC
CCTGGTCATTGCGAAGGAAGGCTGGAATCCTGGAGTGATCGGTATTGTAGCCTCAAGACTTGTGGAGAAGTTTTATCGAC
CGACCATCGTATTGAGTATGGATCCTGAGAAAGGGGTAGCAAAAGGTTCAGCACGAAGTATCAATGGCTTTGATATGTTT
GCCAACCTTTCCGAATGTCGTGACATTCTCCCCCATTTCGGTGGGCATCCGATGGCAGCTGGGATGACCTTGGACCTGGA
ACATGTCGATGAGCTCCGTAATCGCCTAAATGAATTGGCCGAAGAGAAGCTCGTTCCTGAAGATTTCATACCGATCACAT
CCATCGATTTGAAGTGCTCGGTTGATGACATTTCATTGGAGGTCATTGAGGAATTACAGGCTCTTGAACCATTCGGTGTC
GAAAATCCAAAACCGAAATTTCTCATTGAACCATGTAAACTGAAGGAATTCAGAAGAATAGGAAGTGATTCCAAACATCT
CAAGCTTGCTTTGCAGGGCTCCAACACCCAATTGGATGTCATTGGATTCCATTTTGGAGAGGTCTTTGAAGACATTACGC
CGAATGCTTCCTTATCTGTCGTAGGAGAGCTGTCCATCAATGAGTGGAATGGGTTCCGGAAGCCGCAATTGATGTTACAG
GATATCGCAATCAAGGAGAAGCAGCTCTTTGATTATCGTGGGGTCAAGAACCTGAAGGATCGCCTTAATCTATTAGATCC
AGAAAAGGTCCGCCTCCTTGCATTCCAAGAACAAACTGTGGAACAGCTTAGACTAGGAGATTGGCAGGATGTCATCTATC
GAGTGGGTGAGGATGAAACGCTCAATGATCTTGATATTGAAGGACAATACCTCATCATTCTGGATCTTCCATCAAGCAAG
CGCCAATTGAAGGAGCTGATGTTGGCAGGCTCTACAGCTGAACGGATCTATACCGTGTTTCATCACGAAGAAGACCATTA
TTTCAACCCGATCCCGAGCAGGGAATCATTCAAATGGTACTATGCATTCTTGAGAAAGCAAGGTAGGTTCAACTATAAAG
AGAAAGCAAAAGAACTGGCTGCTTATAAAGGGTGGACAAAAGAATCCATCTATTTCATGACAGAGGTGTTTTTTGAGCTT
GAATTTGTTACAATAGACAATGGTGTTGTTACAGTAGCGGACCAACCGATGAAAAGACCGCTGACTGATTCAAGAACGTA
TAGGAGAAAGCAAGAACAGACGAGTCTAGAAAATGACCTATGTTACTCCTCCTATCGTGACTTAAAACGCTGGTTTTTTG
AAAAAGAAAATGATGGTGTTCGATTTGAGGAGGCTCACTAA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(455-561)

DHHA1 domain (DHHA1)

(315-439)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-772)

DHH family (DHH)

(82-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.404

98.219

0.534