Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   V1497_RS13060 Genome accession   NZ_CP143541
Coordinates   2498511..2500805 (-) Length   764 a.a.
NCBI ID   WP_349407977.1    Uniprot ID   -
Organism   Pseudalkalibacillus sp. SCS-8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2493511..2505805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1497_RS13045 (V1497_13065) - 2496876..2497949 (-) 1074 WP_349407974.1 AI-2E family transporter -
  V1497_RS13050 (V1497_13070) - 2498093..2498227 (-) 135 WP_349407975.1 DUF3918 family protein -
  V1497_RS13055 (V1497_13075) - 2498241..2498432 (-) 192 WP_349407976.1 hypothetical protein -
  V1497_RS13060 (V1497_13080) recD2 2498511..2500805 (-) 2295 WP_349407977.1 ATP-dependent RecD-like DNA helicase Machinery gene
  V1497_RS13065 (V1497_13085) - 2500822..2501502 (-) 681 WP_349407978.1 tetratricopeptide repeat protein -
  V1497_RS13070 (V1497_13090) mnmA 2501723..2502835 (-) 1113 WP_349407979.1 tRNA 2-thiouridine(34) synthase MnmA -
  V1497_RS13075 (V1497_13095) - 2502853..2503995 (-) 1143 WP_349407980.1 cysteine desulfurase family protein -
  V1497_RS13080 (V1497_13100) cymR 2504040..2504459 (-) 420 WP_349407981.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 764 a.a.        Molecular weight: 86558.33 Da        Isoelectric Point: 4.5821

>NTDB_id=929374 V1497_RS13060 WP_349407977.1 2498511..2500805(-) (recD2) [Pseudalkalibacillus sp. SCS-8]
MELQGQLQLGNEEKTYVKGSILHVIYQNAETYYTVLKVKTSGTNLAEIEKELIVVGAFPVLLEDESYIFWGDMKEHPKYG
KQFVVDFYRKDLPRTEDGMILYLSSDLFNGIGKKTAEKVVRTLGDNAFSKILEDPEVLNEISSLTEERARTIYETLMEHQ
GLEQLLSTLHNYGIGPSIAMKIYQTYQQESLSVIQSNPYQLIYDIDGVGFKRADEIGQALGIEDTSSERIQAGILYCLKE
LSNQQGHTYMPVDELIQETKRLLFNGQVDDEEIDFYSEIVSLHGDGKAYIEEENAYLPSLFFSERGLIQSIDKIMKQDEY
DRVELSDFYNALGELEEHQGIEYAEAQKDAIYKALTSPMMILTGGPGTGKTTVIKGIIEVYAEIHGLSLDPKDYEKNEYP
FLLVAPTGRAAKRMSESTGLPAVTIHRLLGWKGGSGFEYGEDNPIAGRLLIIDEMSMVDLRLAYRLFDALPEHIQVVMVG
DEDQLPSVGPGQVLKDLIDSTVIPTVQLDEIYRQAKGSTIIQLAHEMKNGTLPDDLHAPQRDRRFFPCKQDQVTQAILQV
CKSAMSKGYTAKDVQVLAPMYRGRAGIDELNKELQEMFNPPNEQKREINHFETIYRVGDKVLQLVNVPEEQIFNGDIGEI
VSIIYAKETTDKEDQIVISFDGIEVTFKKTDLTQITHAYCCSIHKSQGSEFPIVVLPIVRGYFRMLRRNLIYTAVTRSKE
YLILCGEMEALERAVQQNETSRRNSNLSSKLKGYLEQQVEQENV

Nucleotide


Download         Length: 2295 bp        

>NTDB_id=929374 V1497_RS13060 WP_349407977.1 2498511..2500805(-) (recD2) [Pseudalkalibacillus sp. SCS-8]
ATGGAATTACAAGGACAACTCCAACTCGGGAATGAAGAAAAGACATATGTGAAGGGTTCGATTCTGCATGTCATTTATCA
GAATGCCGAAACCTATTACACCGTTCTGAAGGTTAAAACCTCTGGAACGAATCTTGCCGAAATTGAAAAGGAACTGATTG
TCGTCGGCGCATTTCCAGTACTGCTGGAGGATGAATCGTATATTTTCTGGGGAGATATGAAAGAGCATCCAAAATACGGC
AAGCAGTTTGTGGTCGATTTTTATCGTAAAGATCTGCCCCGTACAGAAGATGGAATGATTCTCTATTTATCGAGTGACCT
TTTTAATGGGATCGGGAAGAAAACGGCAGAAAAGGTCGTTCGGACATTAGGCGATAATGCATTCTCGAAAATTCTCGAGG
ACCCGGAAGTCTTGAATGAAATATCGAGCTTAACAGAAGAAAGAGCCCGTACGATTTATGAGACGCTGATGGAGCATCAA
GGGCTGGAGCAGCTGTTAAGCACCCTACATAACTATGGTATCGGTCCTTCCATTGCCATGAAAATTTATCAGACATATCA
GCAGGAATCCTTGTCCGTCATTCAATCGAATCCCTATCAACTGATTTACGATATTGATGGAGTCGGCTTCAAAAGAGCAG
ATGAAATCGGTCAGGCTTTAGGCATAGAAGACACTTCTTCTGAACGTATCCAGGCAGGTATTTTGTATTGCCTGAAGGAG
CTTTCCAATCAACAAGGACATACGTATATGCCGGTTGACGAGCTGATCCAAGAAACGAAGCGGCTCTTGTTCAATGGCCA
GGTTGATGATGAGGAAATTGATTTCTACAGTGAGATTGTGTCTCTACACGGAGATGGAAAAGCGTATATCGAGGAAGAGA
ATGCTTACCTTCCTTCATTGTTTTTCTCGGAACGTGGTCTTATTCAATCGATCGATAAAATCATGAAACAGGATGAATAT
GATCGTGTTGAGCTATCAGACTTTTACAATGCCCTCGGTGAGCTTGAAGAGCATCAAGGTATTGAATATGCGGAAGCCCA
AAAAGATGCGATCTACAAAGCATTGACCTCACCGATGATGATCCTGACAGGGGGCCCAGGTACAGGTAAGACGACCGTCA
TAAAGGGAATTATTGAGGTTTATGCTGAAATTCATGGTCTATCCCTTGATCCAAAGGATTATGAGAAAAATGAGTATCCA
TTCCTGTTGGTGGCACCGACAGGCCGAGCGGCCAAACGGATGAGTGAATCCACAGGGCTTCCAGCGGTTACAATCCATAG
GCTTCTCGGATGGAAAGGTGGAAGCGGCTTCGAGTATGGCGAAGATAATCCGATCGCTGGCCGGTTGTTGATTATTGATG
AAATGTCGATGGTCGATCTCCGTCTCGCATACCGGCTGTTTGATGCACTTCCGGAGCATATCCAGGTCGTGATGGTAGGG
GATGAGGATCAGTTGCCTTCCGTAGGACCTGGGCAGGTACTGAAGGACTTGATTGATTCCACTGTAATCCCTACAGTCCA
GCTCGATGAAATTTACCGGCAGGCGAAAGGATCGACCATTATCCAGCTTGCACATGAAATGAAGAATGGGACTCTGCCTG
ACGACCTTCATGCACCTCAGCGAGATCGACGTTTTTTCCCATGCAAACAAGACCAGGTGACACAAGCGATCCTACAAGTC
TGTAAGAGCGCAATGTCGAAAGGTTACACAGCGAAGGACGTCCAAGTTCTTGCACCTATGTATCGGGGGCGTGCTGGGAT
TGATGAACTGAACAAAGAATTACAAGAGATGTTCAATCCACCGAATGAACAAAAACGAGAAATTAACCATTTTGAAACGA
TTTACCGAGTAGGGGATAAAGTCCTTCAACTGGTCAATGTACCTGAAGAACAGATCTTCAATGGTGATATTGGTGAAATC
GTGTCTATTATTTACGCAAAGGAAACGACAGACAAAGAGGATCAGATTGTCATTTCATTCGATGGCATTGAAGTTACCTT
CAAGAAAACGGACCTTACCCAAATCACCCATGCATATTGCTGTTCCATCCATAAATCCCAGGGAAGCGAATTTCCGATCG
TCGTCCTTCCAATCGTCAGAGGGTATTTTCGGATGTTGAGAAGGAACCTGATCTATACAGCAGTGACCCGAAGCAAAGAG
TACTTGATCCTTTGCGGTGAAATGGAGGCGCTGGAGCGTGCTGTGCAACAAAATGAGACAAGCCGCCGAAATTCCAATCT
AAGTTCAAAATTGAAAGGATATCTTGAACAACAAGTAGAGCAGGAGAACGTATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(343-538)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(677-725)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(590-660)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

55.364

98.822

0.547