Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   ACA344_RS28770 Genome accession   NZ_CP166823
Coordinates   6185694..6186218 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain D9203039     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6180694..6191218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACA344_RS28755 (ACA344_28755) aroB 6181810..6182916 (-) 1107 WP_023096238.1 3-dehydroquinate synthase -
  ACA344_RS28760 (ACA344_28760) aroK 6182966..6183484 (-) 519 WP_003095833.1 shikimate kinase AroK -
  ACA344_RS28765 (ACA344_28765) pilQ 6183496..6185640 (-) 2145 WP_023087871.1 type 4a pilus secretin PilQ Machinery gene
  ACA344_RS28770 (ACA344_28770) comL/pilP 6185694..6186218 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  ACA344_RS28775 (ACA344_28775) pilO 6186215..6186838 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACA344_RS28780 (ACA344_28780) pilN 6186835..6187431 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  ACA344_RS28785 (ACA344_28785) pilM 6187431..6188495 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  ACA344_RS28790 (ACA344_28790) - 6188680..6191151 (+) 2472 WP_003125627.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=928992 ACA344_RS28770 WP_003095836.1 6185694..6186218(-) (comL/pilP) [Pseudomonas aeruginosa strain D9203039]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=928992 ACA344_RS28770 WP_003095836.1 6185694..6186218(-) (comL/pilP) [Pseudomonas aeruginosa strain D9203039]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362