Detailed information NTG0092877

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: R8493_RS08165
• Genome accession: NZ_AP028341
• Coordinates: 1581977..1583158 (+)
• Length: 393 a.a.
• NCBI ID: WP_072230991.1
• Uniprot ID: -
• Organism: Campylobacter coli strain BCH-10328
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1576977..1588158

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8493_RS08140 (B10328_15960)	-	1577790..1579135 (-)	1346	Protein_1582	CitMHS family transporter	-
R8493_RS08145 (B10328_15990)	-	1579379..1579718 (+)	340	Protein_1583	DUF4878 domain-containing protein	-
R8493_RS08150 (B10328_16000)	-	1579702..1580274 (+)	573	WP_002825721.1	YiiX/YebB-like N1pC/P60 family cysteine hydrolase	-
R8493_RS08155 (B10328_16010)	-	1580373..1580726 (+)	354	WP_002825720.1	hypothetical protein	-
R8493_RS08160 (B10328_16020)	-	1580829..1581977 (+)	1149	WP_057033106.1	hypothetical protein	-
R8493_RS08165 (B10328_16030)	rarA	1581977..1583158 (+)	1182	WP_072230991.1	replication-associated recombination protein A	Machinery gene
R8493_RS08170 (B10328_16040)	dapB	1583221..1583949 (+)	729	WP_002825717.1	4-hydroxy-tetrahydrodipicolinate reductase	-
R8493_RS08175 (B10328_16050)	purF	1583951..1585288 (+)	1338	WP_002825716.1	amidophosphoribosyltransferase	-
R8493_RS08180 (B10328_16060)	-	1585253..1586103 (-)	851	Protein_1590	lysostaphin resistance A-like protein	-
R8493_RS08185	-	1586444..1587015 (+)	572	Protein_1591	cytochrome C	-

Sequence

Protein

• Length: 393 a.a.
• Molecular weight: 44752.62 Da
• Isoelectric Point: 8.5114

>NTDB_id=92877 R8493_RS08165 WP_072230991.1 1581977..1583158(+) (rarA) [Campylobacter coli strain BCH-10328]
MSLALNFRPKTLDEILGQQELVEVFKKFISMQKLPHSLFFGPAGCGKTTFARVVAKDFGLDFYEFDGGNFKLEKLRKIIE
NYKNSLYKPLIFIDEIHRLSKTQQEMLLIPMENYRCIVIGASTENPYFVLSSGIRSRSMLFEFKNLGQKDLELLLERVQQ
KIAFKIEDNAKEFLLKSFDARAMLNLLEFALVLNEKEITLENLKKLRNGVNSEGVSSKDTHYILASALIKSLRGSDVDAA
IYYLARLIDAGESADFIARRLVIFSSEDIGNADPNALNLAVSTLEAVKNIGYPEARIILAQCVVYLASTIKSNASYKAIN
EALNYVKNNEALEIPNYLNNNHQEKQNYLYPHDFGGWVEQKYLSKNLKFYHSKGLGEEAKLLDNLYKLKNHKA

Nucleotide

• Length: 1182 bp

>NTDB_id=92877 R8493_RS08165 WP_072230991.1 1581977..1583158(+) (rarA) [Campylobacter coli strain BCH-10328]
ATGAGTTTAGCTTTAAATTTTCGTCCCAAAACCCTAGATGAAATTCTAGGCCAACAAGAACTTGTAGAAGTATTTAAAAA
ATTTATCAGTATGCAAAAACTTCCCCATAGTTTATTTTTTGGACCTGCAGGATGTGGAAAAACAACCTTTGCTAGAGTTG
TAGCTAAGGATTTTGGGCTTGATTTTTATGAATTTGATGGTGGAAATTTCAAACTTGAGAAATTAAGAAAAATCATAGAA
AATTACAAAAACAGCCTTTATAAACCTCTTATTTTTATCGATGAAATTCATCGCTTGAGTAAAACTCAACAAGAAATGCT
TTTAATTCCTATGGAAAATTATCGCTGCATTGTTATAGGTGCAAGTACTGAAAATCCTTATTTTGTTTTAAGTTCAGGCA
TTAGAAGTCGCTCTATGCTTTTTGAATTTAAAAATCTTGGGCAAAAAGATTTAGAACTTTTATTAGAGCGAGTGCAACAA
AAAATAGCATTTAAAATAGAAGATAATGCTAAAGAATTTTTACTAAAAAGCTTCGATGCTAGAGCAATGTTAAATTTACT
TGAATTTGCTTTGGTTTTAAATGAAAAAGAAATCACTTTAGAAAATTTAAAAAAACTTCGCAACGGAGTAAATAGCGAGG
GTGTAAGCTCAAAAGATACTCATTATATTTTAGCAAGTGCTCTTATTAAAAGTTTGCGCGGAAGTGACGTTGATGCAGCT
ATTTATTATCTTGCTCGTTTAATTGATGCAGGAGAAAGCGCTGATTTTATCGCTAGGCGTTTGGTGATTTTTTCAAGTGA
AGATATCGGAAATGCCGATCCAAATGCTTTAAATTTAGCGGTTTCGACTCTAGAGGCTGTTAAAAATATAGGTTATCCTG
AAGCAAGAATTATCCTAGCCCAATGCGTAGTTTATTTAGCAAGCACAATCAAATCTAATGCAAGCTACAAAGCTATCAAT
GAAGCTTTAAACTATGTAAAAAATAATGAAGCTTTAGAAATACCTAATTATCTTAACAACAATCATCAAGAAAAACAAAA
CTATCTTTATCCACATGATTTTGGTGGCTGGGTAGAGCAAAAATATCTTAGTAAAAATTTAAAATTTTATCATAGCAAGG
GCTTAGGAGAAGAAGCAAAATTGTTAGATAATTTATATAAATTAAAAAACCATAAAGCTTAA

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (163-233)

• MgsA AAA+ ATPase C terminal (MgsA_C) (234-388)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (8-121)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	34.3	100	0.361