Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   LMS42_RS08755 Genome accession   NZ_CP143271
Coordinates   1950404..1952260 (-) Length   618 a.a.
NCBI ID   WP_228572904.1    Uniprot ID   -
Organism   Clostridium perfringens strain P201     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1945404..1957260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMS42_RS08740 (LMS42_008740) - 1946400..1947398 (-) 999 WP_003455390.1 2-hydroxyacid dehydrogenase -
  LMS42_RS08745 (LMS42_008745) - 1947725..1948774 (-) 1050 WP_003449992.1 AEC family transporter -
  LMS42_RS08750 (LMS42_008750) - 1949029..1949910 (-) 882 WP_224381221.1 hypothetical protein -
  LMS42_RS08755 (LMS42_008755) rcrQ 1950404..1952260 (-) 1857 WP_228572904.1 ABC transporter ATP-binding protein Regulator
  LMS42_RS08760 (LMS42_008760) - 1952253..1954550 (-) 2298 WP_228572902.1 ABC transporter ATP-binding protein -
  LMS42_RS08765 (LMS42_008765) - 1954873..1955319 (+) 447 WP_011009876.1 MarR family winged helix-turn-helix transcriptional regulator -
  LMS42_RS08770 (LMS42_008770) - 1955453..1956247 (-) 795 WP_111693687.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 618 a.a.        Molecular weight: 68408.09 Da        Isoelectric Point: 6.1467

>NTDB_id=928465 LMS42_RS08755 WP_228572904.1 1950404..1952260(-) (rcrQ) [Clostridium perfringens strain P201]
MSKERKGGMGGPMGRMGGGPRAVEKAKDFKGTMKKLGVYLKPYSLSIAIVILFAIGSAAFSIVGPKILGKATTKIFEGLV
QKISGVPDASIDFGYIGNIAMILVALYLVSSLFGIIQSFIMSGVAQKVSYNLRKQISEKMDTLPLNYFDTRTNGEVLSRI
TNDVDTVNQTLNQSLSQIITSVVTLIGVLIMMFSISWIMTLATFIILPVSMVLISLVVKKSQKYFKSQQEYLGHLNGQVE
EVYGGHNIMKAFNREEASTKDFDELNNTLYKSAWKSQFLSGMMMPIMSFVGNLGYVLVSILGGWLTIKSVITVGDIQAFI
QYVRSFNQPIAQMAQVANIMQSTAAAAERVFEFLDEEDEVKDPVNSVDSSEIRGEVEFEDVHFGYNPDKIIINDFSVDVK
PGQKVAIVGPTGAGKTTIVKLLMRFYDINSGSIKIDGHDIRDFKRADLRNLFGMVLQDTWLFNGTIMENLRYGRLDATDA
EVKEAAKAAHVDHFVKTLPDGYNMVLNEEASNISQGQKQLLTIARAFLKDPKLLILDEATSSVDTRTELLIQKAMEKLME
GRTSFIIAHRLSTIRDADLILVMKDGDIVEQGNHEELLEKGGFYSSLYNSQFEQSSAS

Nucleotide


Download         Length: 1857 bp        

>NTDB_id=928465 LMS42_RS08755 WP_228572904.1 1950404..1952260(-) (rcrQ) [Clostridium perfringens strain P201]
ATGAGTAAAGAAAGAAAAGGCGGAATGGGCGGCCCAATGGGTAGAATGGGCGGAGGCCCAAGAGCCGTTGAAAAAGCAAA
AGATTTTAAAGGAACAATGAAAAAGCTTGGGGTTTATTTAAAACCCTATAGTTTATCTATAGCTATTGTAATATTATTTG
CTATAGGAAGTGCTGCCTTCTCAATTGTAGGACCTAAGATTTTAGGTAAAGCTACTACAAAAATATTTGAAGGTTTAGTT
CAAAAGATATCAGGGGTACCAGATGCTTCTATAGATTTTGGATACATTGGAAATATAGCAATGATTTTAGTAGCTTTATA
CTTAGTAAGTTCATTATTTGGGATTATACAATCTTTTATAATGTCAGGAGTTGCTCAAAAGGTTTCTTATAATTTAAGAA
AGCAAATATCAGAAAAAATGGATACTTTACCTCTTAATTATTTTGATACAAGAACAAATGGAGAGGTTTTATCAAGAATT
ACAAATGACGTTGATACAGTGAACCAAACTTTAAATCAAAGTTTATCACAGATAATAACTTCAGTGGTTACTTTAATTGG
AGTATTAATAATGATGTTCTCAATAAGTTGGATTATGACTTTAGCAACATTTATAATACTTCCAGTTTCAATGGTTCTTA
TATCTTTAGTTGTTAAGAAATCTCAAAAATACTTTAAATCTCAACAAGAATACTTAGGTCATCTTAATGGTCAAGTAGAA
GAGGTTTATGGTGGACACAATATAATGAAAGCTTTCAATAGAGAAGAAGCTTCAACTAAAGACTTTGATGAATTAAATAA
CACTTTATATAAATCAGCTTGGAAATCTCAATTCTTATCAGGTATGATGATGCCAATCATGTCTTTTGTAGGAAACTTAG
GATATGTTTTAGTTTCAATACTTGGTGGATGGTTAACAATTAAAAGTGTTATAACTGTTGGGGATATACAAGCATTTATC
CAATATGTACGTTCATTTAATCAACCGATAGCTCAGATGGCTCAGGTTGCAAATATAATGCAATCAACAGCAGCGGCTGC
TGAGAGAGTATTTGAATTCTTAGATGAAGAGGATGAGGTTAAAGATCCAGTTAATTCAGTAGATTCTTCAGAAATAAGAG
GAGAAGTTGAATTTGAAGATGTTCATTTTGGATATAATCCAGATAAGATAATAATAAATGATTTCTCAGTAGATGTTAAA
CCAGGGCAAAAGGTGGCTATTGTTGGACCTACAGGAGCAGGTAAAACTACAATAGTTAAATTATTAATGAGATTCTACGA
TATAAATAGTGGAAGCATTAAGATTGATGGTCATGATATAAGAGACTTTAAGCGTGCTGATTTACGTAACTTATTTGGTA
TGGTTCTTCAAGATACATGGCTATTTAATGGAACTATAATGGAGAATTTACGTTATGGAAGACTAGATGCAACAGATGCT
GAAGTTAAAGAAGCTGCTAAGGCTGCCCATGTTGATCATTTCGTAAAAACTTTACCAGATGGATATAATATGGTTTTAAA
TGAAGAAGCAAGTAATATATCACAAGGACAAAAGCAACTTTTAACAATTGCTAGAGCTTTCTTAAAAGATCCTAAGCTAT
TGATACTTGATGAGGCTACAAGTTCAGTTGATACTCGTACAGAGCTTTTAATACAAAAAGCTATGGAAAAACTTATGGAA
GGAAGAACAAGCTTTATTATAGCTCACAGACTTTCTACTATACGTGATGCAGACTTAATCCTTGTTATGAAGGATGGAGA
TATAGTTGAACAAGGAAATCATGAAGAGCTTCTAGAAAAAGGTGGATTCTATTCAAGCCTTTACAATAGCCAATTTGAAC
AAAGTAGTGCTTCATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(48-329)

ABC transporter (ABC_tran)

(393-541)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.104

95.307

0.487