Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   VT264_RS08165 Genome accession   NZ_CP143266
Coordinates   1643369..1644148 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain JBCS608     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1638369..1649148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VT264_RS08145 (VT264_08145) trmFO 1639056..1640363 (+) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  VT264_RS08150 (VT264_08150) xerC 1640433..1641350 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  VT264_RS08155 (VT264_08155) hslV 1641366..1641911 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  VT264_RS08160 (VT264_08160) hslU 1641928..1643331 (+) 1404 WP_014305002.1 HslU--HslV peptidase ATPase subunit -
  VT264_RS08165 (VT264_08165) codY 1643369..1644148 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  VT264_RS08170 (VT264_08170) flgB 1644502..1644891 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  VT264_RS08175 (VT264_08175) flgC 1644891..1645343 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  VT264_RS08180 (VT264_08180) fliE 1645354..1645674 (+) 321 WP_003154258.1 flagellar hook-basal body complex protein FliE -
  VT264_RS08185 (VT264_08185) fliF 1645717..1647327 (+) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  VT264_RS08190 (VT264_08190) fliG 1647340..1648356 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  VT264_RS08195 (VT264_08195) fliH 1648349..1649104 (+) 756 WP_003154255.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=928408 VT264_RS08165 WP_003154263.1 1643369..1644148(+) (codY) [Bacillus velezensis strain JBCS608]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=928408 VT264_RS08165 WP_003154263.1 1643369..1644148(+) (codY) [Bacillus velezensis strain JBCS608]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCATTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGGGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGCTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTCGTGGCAAGTAAAATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGTATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471