Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   AB8O64_RS33470 Genome accession   NZ_CP166299
Coordinates   7496386..7498137 (-) Length   583 a.a.
NCBI ID   WP_370423426.1    Uniprot ID   -
Organism   Streptomyces sp. QH1-20     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 7491386..7503137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8O64_RS33455 (AB8O64_33470) - 7491478..7493754 (-) 2277 WP_370423423.1 family 2 encapsulin nanocompartment cargo protein terpene cyclase -
  AB8O64_RS33460 (AB8O64_33475) - 7493978..7494301 (+) 324 WP_370423424.1 nuclear transport factor 2 family protein -
  AB8O64_RS33465 (AB8O64_33480) - 7494292..7496307 (-) 2016 WP_370423425.1 ABC transporter ATP-binding protein -
  AB8O64_RS33470 (AB8O64_33485) rcrP 7496386..7498137 (-) 1752 WP_370423426.1 ABC transporter ATP-binding protein Regulator
  AB8O64_RS33475 (AB8O64_33490) - 7498492..7499523 (+) 1032 WP_370423427.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 583 a.a.        Molecular weight: 63075.54 Da        Isoelectric Point: 9.9921

>NTDB_id=928204 AB8O64_RS33470 WP_370423426.1 7496386..7498137(-) (rcrP) [Streptomyces sp. QH1-20]
MLIRLLRARLRPYGRSVTLLVLLQLVQVTATLLLPMFGAAVIDNGVVKADTDYIWRTGAVMLVVAALQIACAIGAVTLGS
RTSMALGRDLRSAVFRRVLDFSAREVGRFGTPSLITRTVNDVQQVQALTQSAFGIAVSAPIMCVGSVLLALRQDVPLSMF
LVAIVVVIAGTFTLILTRMSPWYDLMQQRVDQVNRMLREQITGVRVVRAFVRDTHERERFTRTNAEMTALSLRVARLIAA
MLPLVMLVMNAFMVGLIWFGARRIEAGSMQLGSLSAFLSYLGLILMSVVMVTFVFLAVPRARVSAERIQEVLDTEPSVKA
PETPVPAGPDAGRLELRAVEFRYPGAEEPVLRDIDLTAGPGETVAILGSTGSGKTTLLNVLLRLFDRTGGSVLVGGVDVR
AYDADALSRTVGFVPQKPYLFSGTVASNLRFGHPGATDEELWRALEIAQARDFVARMPGGLGARIAQGGTNLSGGQRQRL
SIARTLVRRPDIYLFDDCFSALDYATDAALRAALAPEIAGATVVVVAQRVSTVRHADRIVVLDAGRVVGTGTHEELMRDS
TTYREIALSQLTSEEAAGATPQP

Nucleotide


Download         Length: 1752 bp        

>NTDB_id=928204 AB8O64_RS33470 WP_370423426.1 7496386..7498137(-) (rcrP) [Streptomyces sp. QH1-20]
GTGCTGATCAGACTCCTGCGTGCCCGCCTGCGCCCCTACGGCCGCTCCGTCACCCTTCTCGTGCTGCTGCAACTGGTGCA
GGTCACGGCCACGTTGCTGCTGCCCATGTTCGGTGCCGCGGTCATCGACAACGGCGTGGTCAAGGCCGATACCGATTACA
TCTGGCGGACCGGTGCCGTCATGCTCGTCGTGGCGGCCCTGCAGATCGCCTGCGCGATCGGCGCGGTGACCCTCGGCTCC
CGCACCTCGATGGCCCTCGGACGCGATCTGCGCTCGGCGGTCTTCCGCCGGGTGCTGGACTTCTCCGCCCGCGAGGTGGG
CCGCTTCGGCACCCCCTCGCTGATCACCAGAACGGTCAACGACGTCCAGCAGGTCCAGGCGCTGACCCAGTCGGCCTTCG
GCATCGCGGTGTCGGCACCCATCATGTGCGTCGGCAGTGTGCTGCTGGCGCTGCGTCAGGACGTACCGCTGTCGATGTTC
CTGGTGGCGATCGTCGTGGTGATCGCCGGCACCTTCACGCTCATCCTGACCCGGATGAGCCCGTGGTACGACCTGATGCA
ACAGCGCGTCGACCAGGTCAACCGGATGCTGCGCGAGCAGATCACCGGGGTCCGGGTGGTGCGGGCCTTCGTGCGCGACA
CCCACGAACGCGAGCGGTTCACCCGGACGAACGCCGAGATGACCGCGCTGTCACTGCGCGTCGCCCGGCTGATAGCGGCG
ATGCTCCCCCTCGTCATGCTGGTGATGAACGCCTTCATGGTGGGGCTGATCTGGTTCGGCGCCCGCCGGATCGAGGCCGG
ATCGATGCAGCTCGGCTCGCTGAGCGCCTTCCTGAGCTATCTCGGTCTGATCCTCATGTCCGTCGTGATGGTGACGTTCG
TCTTCCTGGCCGTTCCCCGCGCGAGGGTGTCCGCCGAACGCATCCAGGAGGTGCTCGACACCGAGCCGAGCGTCAAGGCC
CCCGAGACCCCGGTCCCCGCCGGCCCGGACGCCGGCCGGCTGGAGCTGCGTGCCGTGGAGTTCCGCTACCCGGGGGCGGA
GGAGCCGGTATTGCGGGACATCGACCTCACGGCCGGTCCCGGGGAGACGGTGGCGATCCTCGGCAGCACCGGGAGCGGCA
AGACGACCCTGCTGAACGTGCTGCTGCGGCTCTTCGACCGCACGGGCGGATCGGTCCTGGTGGGCGGCGTCGACGTGCGC
GCCTACGACGCCGACGCCCTCTCCCGCACCGTCGGCTTCGTACCGCAGAAGCCCTATCTCTTCTCCGGCACCGTGGCGAG
CAATCTGCGCTTCGGCCACCCCGGGGCCACCGACGAGGAGCTGTGGCGCGCCCTGGAGATCGCCCAGGCCCGGGACTTCG
TCGCGCGCATGCCCGGTGGGCTGGGCGCGCGGATCGCCCAGGGCGGCACCAACCTCTCGGGCGGGCAGCGACAGCGGCTG
TCCATCGCGCGCACGCTGGTGCGCCGGCCCGACATCTATCTCTTCGACGACTGTTTCTCGGCGCTCGACTACGCCACGGA
CGCGGCACTGCGGGCGGCCCTCGCCCCCGAGATCGCCGGGGCGACGGTGGTCGTCGTCGCCCAACGGGTCAGCACGGTCC
GGCACGCCGACCGCATCGTGGTCCTCGACGCCGGGCGCGTGGTGGGCACCGGCACCCATGAGGAGCTGATGCGCGACAGC
ACGACGTACCGCGAGATCGCGCTCTCCCAGCTCACCAGCGAGGAGGCCGCCGGTGCGACGCCACAGCCGTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(351-499)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.961

92.453

0.36