Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   AB8O64_RS20885 Genome accession   NZ_CP166299
Coordinates   4589862..4591595 (+) Length   577 a.a.
NCBI ID   WP_370420609.1    Uniprot ID   -
Organism   Streptomyces sp. QH1-20     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4584862..4596595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8O64_RS20850 (AB8O64_20865) - 4585246..4585497 (-) 252 WP_370420604.1 DUF3099 domain-containing protein -
  AB8O64_RS20855 (AB8O64_20870) - 4585598..4585885 (-) 288 WP_184736277.1 DUF1416 domain-containing protein -
  AB8O64_RS20860 (AB8O64_20875) - 4585917..4586756 (-) 840 WP_130879273.1 sulfurtransferase -
  AB8O64_RS20865 (AB8O64_20880) - 4586902..4586982 (-) 81 WP_356454418.1 putative leader peptide -
  AB8O64_RS20870 (AB8O64_20885) - 4587210..4587908 (-) 699 WP_365214592.1 DUF2993 domain-containing protein -
  AB8O64_RS20875 (AB8O64_20890) - 4588033..4589421 (-) 1389 WP_370420607.1 hypothetical protein -
  AB8O64_RS20880 (AB8O64_20895) - 4589432..4589716 (-) 285 WP_370423914.1 MoaD/ThiS family protein -
  AB8O64_RS20885 (AB8O64_20900) rcrP 4589862..4591595 (+) 1734 WP_370420609.1 ABC transporter ATP-binding protein Regulator
  AB8O64_RS20890 (AB8O64_20905) rcrQ 4591694..4593586 (+) 1893 WP_370423915.1 ABC transporter ATP-binding protein Regulator
  AB8O64_RS20895 (AB8O64_20910) - 4593692..4594546 (-) 855 WP_370420611.1 alpha/beta hydrolase family protein -
  AB8O64_RS20900 (AB8O64_20915) - 4594786..4595574 (+) 789 WP_356454317.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62915.23 Da        Isoelectric Point: 5.7546

>NTDB_id=928176 AB8O64_RS20885 WP_370420609.1 4589862..4591595(+) (rcrP) [Streptomyces sp. QH1-20]
MLVRLLRAYLRPYSKPIALVVLLQLIQTLATLYLPTLNADIIDNGVVKGDTGYILEIGGWMLAVTVGQIVCAIGAVYYGA
RTAMAVGRDLRATVFDRVQSFSARELGHFGAPSLITRTTNDVQQVQMLALMSFTLMVSAPIMCVGGIAMALHQDVPLSAL
LLIIVPVLGAVVSLIIWRMRPLFRGMQDRIDTVNRVLREQITGIRVIRAFVRDTHERKRFARANTDLMDVSVRAGRLMSL
MFPSTMLVVNLSSVAVLWFGGHRIDDGHMEIGALTAFLSYLMQILMAVMMATFMFMMVPRAEVCAERIQEVLATDSSVVP
PAEPVTELRRAGHLELRGVEFRFPGAEEPVLKDVSLTARPGETTAVIGSTGSGKSTLLGLIPRLFDATDGAVLLDGVDVR
DLDPALMAESVGLVPQKPYLFSGTIASNLRYGRPDASDEELWQALETAQAREFVERMELGLAAPIAQGGSNVSGGQRQRL
AIARALVRRPGIYLFDDSFSALDYATDARLRAALAQETGDATVVIVAQRVSTIRDADRILVLDEGRVVGSGTHTELMASN
DTYREIVLSQLTEEEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=928176 AB8O64_RS20885 WP_370420609.1 4589862..4591595(+) (rcrP) [Streptomyces sp. QH1-20]
GTGTTGGTACGACTTCTACGGGCGTACTTGAGGCCCTATTCGAAACCGATCGCGCTCGTGGTGTTGCTCCAGCTCATACA
GACGCTGGCCACGCTCTACCTCCCCACGCTGAACGCGGACATCATCGACAACGGCGTGGTGAAGGGGGACACGGGGTACA
TCCTCGAAATCGGCGGCTGGATGCTGGCCGTCACGGTCGGCCAGATCGTCTGCGCGATCGGCGCCGTCTATTACGGCGCC
CGCACGGCCATGGCGGTCGGCCGCGATCTGCGCGCCACGGTCTTCGACCGGGTGCAGTCCTTCTCGGCCCGCGAGCTGGG
CCACTTCGGGGCACCGTCGCTCATCACCCGCACCACCAATGACGTGCAGCAGGTCCAGATGCTGGCCCTGATGTCCTTCA
CCCTCATGGTCTCCGCGCCGATCATGTGCGTCGGCGGTATCGCGATGGCCCTGCACCAGGACGTGCCGCTGTCCGCACTG
CTGCTGATCATCGTGCCGGTGCTCGGGGCCGTGGTCTCGCTGATCATCTGGCGGATGCGGCCGCTCTTCCGCGGCATGCA
GGACCGCATCGACACCGTCAACCGCGTGCTGCGCGAGCAGATCACCGGCATCCGCGTCATCCGCGCCTTCGTCCGCGACA
CCCACGAGCGGAAGCGCTTCGCGCGCGCCAACACCGACCTGATGGACGTCTCCGTGCGCGCCGGGCGGCTGATGTCGCTG
ATGTTCCCCTCGACGATGCTGGTGGTGAATCTGTCCTCGGTCGCCGTCCTGTGGTTCGGCGGGCACCGCATCGACGACGG
GCACATGGAGATCGGTGCGCTCACCGCGTTCCTCAGCTACCTCATGCAGATCCTGATGGCCGTGATGATGGCGACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCCGAGCGCATCCAGGAGGTCCTGGCCACCGACTCCAGCGTGGTGCCC
CCGGCCGAGCCGGTCACCGAGCTGCGCCGCGCCGGCCATCTGGAGCTGCGCGGAGTGGAGTTCCGCTTCCCGGGCGCCGA
GGAGCCGGTCCTCAAGGACGTCTCCCTGACGGCCCGGCCCGGCGAGACCACGGCCGTCATCGGCTCCACGGGCAGCGGCA
AGTCCACGCTGCTGGGCCTGATCCCGCGCCTGTTCGACGCGACCGACGGCGCGGTGCTGCTCGACGGCGTGGACGTACGG
GACCTGGACCCGGCCCTGATGGCCGAGAGCGTCGGCCTCGTCCCGCAGAAGCCCTACCTCTTCTCCGGCACCATCGCCTC
CAACCTGCGCTACGGACGGCCGGACGCGAGCGACGAGGAGCTGTGGCAGGCGCTGGAGACCGCGCAGGCCCGGGAGTTCG
TGGAACGGATGGAGCTGGGGCTGGCCGCGCCCATCGCGCAGGGCGGCTCCAACGTCTCCGGCGGGCAGCGGCAGCGCCTG
GCCATCGCGCGGGCCCTGGTCCGCAGACCGGGCATCTATCTCTTCGACGACTCCTTCTCCGCGCTCGACTACGCCACCGA
CGCCCGGCTGCGGGCCGCGCTGGCCCAGGAGACGGGCGACGCGACGGTCGTCATCGTCGCCCAGCGGGTGTCCACCATCC
GTGACGCCGACCGGATCCTCGTCCTCGACGAGGGACGGGTCGTCGGCAGCGGTACCCACACCGAGCTCATGGCGTCCAAC
GACACCTACCGGGAGATCGTCCTCTCCCAGCTCACCGAGGAGGAGGCAGCGTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.336

100

0.416