Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   AB8O64_RS07365 Genome accession   NZ_CP166299
Coordinates   1666678..1668048 (-) Length   456 a.a.
NCBI ID   WP_370418472.1    Uniprot ID   -
Organism   Streptomyces sp. QH1-20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1661678..1673048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8O64_RS07340 (AB8O64_07350) - 1661807..1662133 (-) 327 WP_130876872.1 DUF6167 family protein -
  AB8O64_RS07345 (AB8O64_07355) - 1662142..1662582 (-) 441 WP_370418469.1 DUF948 domain-containing protein -
  AB8O64_RS07350 (AB8O64_07360) - 1662786..1665059 (+) 2274 WP_370418470.1 regulator -
  AB8O64_RS07355 (AB8O64_07365) rpsD 1665085..1665699 (-) 615 WP_356452063.1 30S ribosomal protein S4 -
  AB8O64_RS07360 (AB8O64_07370) - 1665885..1666631 (+) 747 WP_370418471.1 DUF2470 domain-containing protein -
  AB8O64_RS07365 (AB8O64_07375) rarA 1666678..1668048 (-) 1371 WP_370418472.1 replication-associated recombination protein A Machinery gene
  AB8O64_RS07370 (AB8O64_07380) - 1668210..1668872 (-) 663 WP_365371824.1 vitamin K epoxide reductase family protein -
  AB8O64_RS07375 (AB8O64_07385) hisS 1668932..1670194 (-) 1263 WP_370418473.1 histidine--tRNA ligase -
  AB8O64_RS07380 (AB8O64_07390) - 1670205..1670939 (-) 735 WP_370418474.1 MBL fold metallo-hydrolase -
  AB8O64_RS07385 (AB8O64_07395) - 1671148..1671963 (+) 816 WP_370418475.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48494.90 Da        Isoelectric Point: 5.9870

>NTDB_id=928141 AB8O64_RS07365 WP_370418472.1 1666678..1668048(-) (rarA) [Streptomyces sp. QH1-20]
MEPDLFTAAAEDRQEKDPASSPLAVRMRPRTLDEVVGQGHLLKQGSPLRRLVGEGSGGPAGPSSVILWGPPGIGKTTLAY
VVSQATNKRFVELSAITAGVKEVRAVIDGARRASGGYGKDTVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYF
SIISPLLSRSLLLTLQALTDDDLRDLLHRALTDERGLGGAVTLPEDAEGHLLRIAGGDARRALTALEAGAGSAIAKGESE
ITLETLEDAVDRAAVKYDRAGDQHYDVASALIKSIRGSDVDATLHYLARMIEAGEDPRFIARRLMISASEDIGLADPTAL
QTAVAGAQAVALIGFPEARIVLGQVAVALALAPKSNAAYLAIDAALADVRAGLAGPVPPHLRDGHYKGAEKLGHAQGYLY
PHDLPGGIAAQQYAPDAIHGKRYYEPTRYGAEARYADVVERVRSRLRGEQPPAAEQ

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=928141 AB8O64_RS07365 WP_370418472.1 1666678..1668048(-) (rarA) [Streptomyces sp. QH1-20]
GTGGAACCCGACCTGTTCACCGCAGCCGCAGAGGACCGCCAGGAGAAAGACCCGGCGAGCAGCCCGCTGGCCGTCCGCAT
GCGCCCCCGCACCCTCGACGAAGTCGTCGGCCAGGGCCATCTCCTCAAGCAGGGCTCACCGCTGCGCCGACTGGTGGGGG
AGGGGAGCGGCGGCCCCGCCGGGCCGTCCTCGGTGATCCTCTGGGGCCCGCCCGGCATCGGCAAGACGACGCTGGCCTAT
GTCGTCAGCCAGGCGACCAACAAGCGCTTCGTCGAGCTGTCGGCGATCACCGCCGGGGTGAAGGAGGTGCGGGCCGTCAT
CGACGGCGCCCGCCGCGCCTCGGGCGGCTACGGCAAGGACACCGTCCTCTTCCTCGACGAGATCCACCGCTTCAGCAAGG
CGCAGCAGGACTCCCTGCTGCCCGCCGTCGAGAACCGCTGGGTCACCCTCATCGCGGCCACCACGGAGAACCCCTACTTC
TCGATCATCTCGCCGCTGCTCTCGCGTTCCCTGCTGCTGACGCTCCAGGCGCTCACCGACGACGACCTGCGCGATCTGCT
GCACCGCGCGCTCACCGACGAGCGCGGGCTCGGCGGCGCGGTGACCCTGCCCGAGGACGCCGAGGGGCATCTGCTGCGGA
TCGCCGGGGGCGACGCCCGGCGTGCTCTGACGGCCCTGGAGGCCGGGGCCGGGTCGGCCATCGCCAAGGGCGAGAGCGAG
ATCACCCTGGAGACGCTGGAGGACGCCGTCGACCGGGCGGCGGTGAAGTACGACCGCGCCGGCGACCAGCACTACGACGT
GGCCAGCGCGCTCATCAAGTCCATCCGCGGCTCGGACGTGGACGCCACGCTGCACTACCTCGCCCGCATGATCGAGGCAG
GGGAGGACCCGAGGTTCATCGCCCGGCGGCTGATGATCTCGGCGAGTGAGGACATCGGCCTGGCCGACCCCACGGCCCTG
CAGACGGCGGTCGCGGGCGCCCAGGCCGTCGCGCTGATCGGCTTCCCCGAGGCGCGCATCGTGCTGGGGCAGGTGGCCGT
GGCGCTCGCCCTGGCTCCGAAGTCCAACGCGGCGTATCTCGCGATCGACGCTGCGCTCGCGGACGTGCGGGCGGGGCTCG
CCGGGCCCGTGCCCCCGCATCTGCGGGACGGGCACTACAAGGGCGCCGAGAAGCTCGGCCACGCGCAGGGCTATCTCTAC
CCCCACGACCTGCCCGGCGGTATCGCCGCCCAGCAGTACGCACCGGACGCGATCCACGGCAAGCGGTACTACGAGCCGAC
GCGCTACGGCGCCGAGGCCCGCTACGCGGATGTGGTGGAGCGGGTACGGTCCCGGCTGCGCGGTGAGCAGCCGCCGGCCG
CGGAGCAGTAG

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(200-276)

MgsA AAA+ ATPase C terminal (MgsA_C)

(277-442)

ATPase family associated with various cellular activities (AAA) (AAA)

(65-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

44.651

94.298

0.421