Detailed information NTG0927416

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: VXJ98_RS05750
• Genome accession: NZ_CP142855
• Coordinates: 1167530..1169953 (-)
• Length: 807 a.a.
• NCBI ID: WP_017176177.1
• Uniprot ID: -
• Organism: Staphylococcus hominis strain Sh8213
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1162530..1174953

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VXJ98_RS05725 (VXJ98_05725)	-	1162641..1163276 (-)	636	WP_017176181.1	O-methyltransferase	-
VXJ98_RS05730 (VXJ98_05730)	-	1163537..1163851 (-)	315	WP_017176180.1	DUF1292 domain-containing protein	-
VXJ98_RS05735 (VXJ98_05735)	ruvX	1163866..1164294 (-)	429	WP_017176179.1	Holliday junction resolvase RuvX	-
VXJ98_RS05740 (VXJ98_05740)	-	1164295..1164555 (-)	261	WP_002448947.1	IreB family regulatory phosphoprotein	-
VXJ98_RS05745 (VXJ98_05745)	alaS	1164620..1167250 (-)	2631	WP_017176178.1	alanine--tRNA ligase	-
VXJ98_RS05750 (VXJ98_05750)	recD2	1167530..1169953 (-)	2424	WP_017176177.1	ATP-dependent RecD-like DNA helicase	Machinery gene
VXJ98_RS05755 (VXJ98_05755)	-	1169955..1170626 (-)	672	WP_017176176.1	tetratricopeptide repeat protein	-
VXJ98_RS05760 (VXJ98_05760)	mnmA	1170713..1171825 (-)	1113	WP_017176175.1	tRNA 2-thiouridine(34) synthase MnmA	-
VXJ98_RS05765 (VXJ98_05765)	-	1171829..1172968 (-)	1140	WP_017176174.1	cysteine desulfurase family protein	-
VXJ98_RS05770 (VXJ98_05770)	-	1173168..1174172 (+)	1005	WP_017176173.1	LLM class flavin-dependent oxidoreductase	-
VXJ98_RS05775 (VXJ98_05775)	-	1174271..1174414 (-)	144	WP_017176172.1	SAS049 family protein	-
VXJ98_RS05780 (VXJ98_05780)	cymR	1174524..1174946 (-)	423	WP_002448977.1	cysteine metabolism transcriptional regulator CymR	-

Sequence

Protein

• Length: 807 a.a.
• Molecular weight: 91617.97 Da
• Isoelectric Point: 4.7254

>NTDB_id=927416 VXJ98_RS05750 WP_017176177.1 1167530..1169953(-) (recD2) [Staphylococcus hominis strain Sh8213]
MSNPTLFDYSMVKGTVDTILFQNKDNFYTVLKVDSIETNESFDNLPTVVGFFPNIVEGDVYTFKGQIVQHPRYGKQLKAE
TFEKELPQTKDAIISYLSSDLFKGIGKKTAQNIVNTLGENAINDILTDPSVLENVPSLAKSKQKQIAEQISANQESEKIM
IRLHDLGFGPKLSMAIYQFYQSETLKILENNPYQLVYDVKGIGFQKADTLARNNGIAYNDSERLKAGLLYSLEEECIKQG
HTYLDENAVLEITEDMLSDKHLDETIEQEQLKHVLQTLFEEKKIILENSHVAIPSLYYSELKSVQNLYRINTYKNHFKII
EQSDLQIHIGEIEDQNNVNYAKSQQEALETAMNSKIMLLTGGPGTGKTTVIKGIVELYAEIHGLSLKYSDYQEDDYPIVL
AAPTGRASKRLQESTGLEAMTIHRLIGWNQDTQPEDILENEIKAKLIIIDEMSMVDSWLFHQFLSAVPLDAQIILVGDED
QLPSVGPGQVFKDLIESKAFPRVNLTEVYRQQDGSSIIDLAHRMKHHESIDITKRYHDRSFIHCNVEQIPTVVEKVVSSA
VNKGYDMSDIQVLAPMYKGSAGIKRLNQVLQNILNPKEKDTREIEFGDIKFRKGDKVLQLVNRPNDNIFNGDIGVIVGIF
WAKENALNKDVLIVDFEGNEITFTRQDLLELTHAYCTSIHKSQGSEFPIVIMPIVKQYFKMLQRPILYTGLTRAKQSLVL
LGDPKAFDIALNTQGQERHTQLKTLIINYFGMSQVNIDVEENDEPINIDDTEDNNADEHITLSEETIYQINPMINMGNVS
PYDFVEH

Nucleotide

• Length: 2424 bp

>NTDB_id=927416 VXJ98_RS05750 WP_017176177.1 1167530..1169953(-) (recD2) [Staphylococcus hominis strain Sh8213]
ATGTCAAACCCTACACTATTTGATTACTCAATGGTTAAAGGAACAGTTGATACCATTCTATTTCAAAATAAAGATAACTT
TTATACTGTTTTAAAAGTAGATTCCATTGAAACTAATGAATCATTTGATAATCTGCCTACAGTTGTAGGGTTTTTTCCTA
ATATTGTTGAAGGAGATGTCTATACGTTTAAAGGACAAATTGTTCAACATCCTCGTTATGGTAAACAACTTAAAGCTGAA
ACATTTGAAAAAGAACTGCCTCAAACTAAAGATGCCATAATAAGTTATTTATCTAGTGATTTATTTAAAGGTATTGGTAA
AAAGACTGCTCAGAATATTGTAAATACATTAGGAGAAAATGCAATAAATGATATTTTAACTGATCCTTCTGTTCTCGAAA
ACGTTCCTAGTTTAGCAAAATCGAAACAAAAACAGATTGCAGAACAAATTAGTGCAAATCAAGAGTCAGAAAAAATAATG
ATTCGCTTACATGACTTAGGTTTTGGTCCAAAATTATCCATGGCGATTTATCAATTTTATCAATCAGAGACTTTAAAAAT
TCTAGAAAACAATCCATACCAATTAGTTTATGATGTAAAAGGTATTGGTTTTCAAAAAGCTGATACATTAGCTAGAAATA
ATGGTATTGCTTATAACGATTCAGAACGTTTAAAAGCTGGGTTATTATATTCTCTTGAAGAAGAATGTATAAAACAGGGA
CATACTTATTTAGATGAAAATGCTGTATTAGAAATTACAGAAGATATGCTTTCAGATAAGCATTTAGATGAAACAATTGA
ACAAGAACAATTAAAACATGTGCTACAAACACTTTTTGAAGAAAAGAAAATTATTTTAGAGAATAGTCATGTTGCGATTC
CAAGTTTATACTATTCAGAACTTAAAAGTGTTCAAAATTTGTATCGTATCAACACATACAAAAATCACTTTAAAATAATA
GAGCAATCAGATTTACAGATACATATTGGTGAAATAGAAGATCAAAATAATGTTAATTATGCTAAATCACAACAAGAAGC
ACTTGAAACGGCGATGAATTCGAAAATAATGTTACTAACTGGAGGTCCAGGAACAGGTAAAACAACTGTTATTAAAGGGA
TTGTAGAATTGTATGCTGAAATTCATGGTCTATCTCTTAAGTATTCCGATTATCAAGAAGATGATTATCCAATCGTATTA
GCCGCCCCAACTGGAAGGGCATCAAAACGTTTACAAGAATCAACTGGATTAGAAGCAATGACGATTCATCGATTAATAGG
ATGGAATCAAGATACTCAACCAGAAGATATTCTTGAAAATGAAATTAAAGCTAAGCTCATTATAATTGATGAAATGTCAA
TGGTTGATTCTTGGTTGTTCCATCAATTTTTAAGTGCCGTTCCACTAGATGCACAAATTATTTTAGTAGGCGATGAAGAT
CAATTGCCGTCTGTCGGTCCTGGCCAAGTATTTAAGGATTTAATTGAGTCTAAAGCATTTCCAAGAGTTAATTTAACTGA
AGTTTATCGCCAACAAGATGGTTCTAGTATTATTGACTTAGCTCATCGCATGAAACATCATGAGTCAATAGATATTACAA
AACGTTATCACGATAGAAGTTTTATTCATTGCAATGTAGAACAAATTCCAACCGTAGTGGAGAAAGTAGTATCTAGCGCT
GTAAATAAAGGATATGATATGAGTGATATTCAAGTTTTAGCACCTATGTACAAAGGAAGTGCAGGGATAAAAAGACTTAA
TCAAGTATTACAAAATATTTTAAATCCTAAAGAAAAAGATACAAGAGAAATAGAGTTTGGCGATATAAAGTTTAGAAAAG
GAGACAAAGTTTTACAACTAGTTAATCGACCAAATGACAATATTTTTAATGGTGATATTGGCGTCATAGTAGGTATATTT
TGGGCTAAAGAAAATGCACTTAATAAAGATGTACTGATTGTCGATTTTGAAGGAAATGAAATTACATTTACTAGACAAGA
TTTATTAGAACTTACACATGCTTATTGTACCTCAATCCATAAATCACAAGGATCAGAATTCCCAATTGTTATTATGCCTA
TTGTCAAACAATATTTTAAAATGTTGCAAAGACCTATTTTATATACAGGTCTGACACGTGCAAAACAATCTTTAGTACTA
TTAGGAGATCCAAAAGCATTTGACATTGCCTTAAATACTCAAGGTCAAGAAAGACATACACAATTAAAAACACTAATTAT
AAATTATTTTGGTATGAGTCAGGTTAATATAGACGTAGAAGAGAATGATGAACCGATAAATATAGATGATACAGAGGATA
ATAATGCAGATGAACACATTACTTTAAGTGAAGAAACAATTTATCAAATTAATCCAATGATTAATATGGGAAATGTTTCA
CCTTACGACTTTGTTGAACATTGA

Domains

Predicted by InterproScan.

• UvrD-like helicase C-terminal domain (UvrD_C_2) (673-721)

• AAA domain (AAA_30) (340-545)

• Helix-hairpin-helix containing domain (HHH_RecD2) (153-243)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (586-656)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	49.129	99.628	0.489