Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VXJ98_RS04280 Genome accession   NZ_CP142855
Coordinates   871253..872299 (+) Length   348 a.a.
NCBI ID   WP_002448773.1    Uniprot ID   A0A1L8Y9S1
Organism   Staphylococcus hominis strain Sh8213     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 866253..877299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXJ98_RS04255 (VXJ98_04255) ymfI 867118..867822 (+) 705 WP_017174621.1 elongation factor P 5-aminopentanone reductase -
  VXJ98_RS04260 (VXJ98_04260) - 867941..868783 (+) 843 WP_002448864.1 DUF3388 domain-containing protein -
  VXJ98_RS04265 (VXJ98_04265) - 868804..869196 (+) 393 WP_017174622.1 helix-turn-helix domain-containing protein -
  VXJ98_RS04270 (VXJ98_04270) pgsA 869229..869804 (+) 576 WP_017174623.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  VXJ98_RS04275 (VXJ98_04275) - 869937..871076 (+) 1140 WP_017174624.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  VXJ98_RS04280 (VXJ98_04280) recA 871253..872299 (+) 1047 WP_002448773.1 recombinase RecA Machinery gene
  VXJ98_RS04285 (VXJ98_04285) rny 872563..874122 (+) 1560 WP_002448856.1 ribonuclease Y -
  VXJ98_RS04290 (VXJ98_04290) - 874196..874411 (-) 216 WP_002448781.1 hypothetical protein -
  VXJ98_RS04295 (VXJ98_04295) - 874565..875359 (+) 795 WP_017174625.1 TIGR00282 family metallophosphoesterase -
  VXJ98_RS04300 (VXJ98_04300) - 875469..877229 (+) 1761 WP_017174626.1 2-oxoacid:acceptor oxidoreductase subunit alpha -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37830.71 Da        Isoelectric Point: 5.0030

>NTDB_id=927410 VXJ98_RS04280 WP_002448773.1 871253..872299(+) (recA) [Staphylococcus hominis strain Sh8213]
MDNDRQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSVSSGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAEALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRIAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGERMGQGKENVKTYLKENPQIKDEIDR
KLREKLGIFDGDVEENEDKSSQTLFDEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=927410 VXJ98_RS04280 WP_002448773.1 871253..872299(+) (recA) [Staphylococcus hominis strain Sh8213]
TTGGATAATGATCGTCAAAAAGCTTTAGATACAGTTATAAAAAATATGGAAAAATCCTTTGGTAAGGGTGCAGTAATGAA
ATTAGGCGATAATAAAGGTCGTCGTGTATCTAGTGTATCAAGTGGTTCAGTTACTTTAGATAATGCACTAGGTGTAGGTG
GTTATCCTAAAGGAAGAATTATTGAAATATATGGTCCTGAAAGTTCCGGTAAAACAACAGTAGCACTTCATGCCATTGCT
GAAGTACAAAAAAATGGAGGCGTTGCTGCGTTTATCGATGCTGAACATGCACTTGATCCAGTATATGCTGAAGCATTAGG
TGTTGATATAGATAATTTATATCTTTCTCAACCCGACCATGGTGAACAAGGTTTAGAAATAGCAGAAGCTTTCGTAAGAA
GTGGAGCAGTTGACATTGTTGTTGTAGACTCAGTTGCTGCTTTGACTCCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACACATGTTGGTCTTCAAGCACGTTTAATGTCTCAGGCTTTGCGTAAACTTTCAGGTGCAATTTCAAAATCAAATACTAC
AGCTATATTTATTAACCAAATTCGTGAAAAAGTTGGAGTAATGTTTGGTAATCCAGAAACTACACCAGGTGGTAGAGCAT
TAAAATTCTATAGCTCAGTACGTTTAGAAGTGCGTCGTGCAGAACAATTAAAACAAGGTCAAGATATTGTAGGTAACAGA
ACTAAAATTAAAGTTGTTAAAAATAAAGTAGCACCACCATTTAGAATTGCTGAAGTAGATATCATGTATGGTCAAGGTAT
TTCAAAAGAGGGCGAATTAATTGACTTAGGTGTAGAAAATGATATTGTCGATAAATCTGGTGCTTGGTACTCATATAATG
GTGAGAGAATGGGTCAAGGTAAGGAAAATGTTAAAACATATCTTAAAGAAAACCCTCAAATTAAAGATGAAATCGATCGC
AAATTACGTGAAAAATTAGGCATTTTCGATGGTGATGTTGAAGAAAATGAAGATAAATCATCACAAACATTATTCGATGA
AGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1L8Y9S1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

77.914

93.678

0.73
  recA Latilactobacillus sakei subsp. sakei 23K

69.253

100

0.693
  recA Streptococcus pneumoniae Rx1

65.517

100

0.655
  recA Streptococcus pneumoniae TIGR4

65.517

100

0.655
  recA Streptococcus pneumoniae R6

65.517

100

0.655
  recA Streptococcus pneumoniae D39

65.517

100

0.655
  recA Streptococcus pyogenes NZ131

68.997

94.54

0.652
  recA Streptococcus mutans UA159

64.857

100

0.652
  recA Streptococcus mitis NCTC 12261

65.318

99.425

0.649
  recA Streptococcus mitis SK321

64.74

99.425

0.644
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.192

97.414

0.635
  recA Lactococcus lactis subsp. cremoris KW2

66.163

95.115

0.629
  recA Neisseria gonorrhoeae MS11

66.565

94.54

0.629
  recA Neisseria gonorrhoeae MS11

66.565

94.54

0.629
  recA Neisseria gonorrhoeae strain FA1090

66.565

94.54

0.629
  recA Acinetobacter baumannii D1279779

66.564

93.678

0.624
  recA Acinetobacter baylyi ADP1

66.564

93.678

0.624
  recA Helicobacter pylori 26695

65.854

94.253

0.621
  recA Helicobacter pylori strain NCTC11637

65.549

94.253

0.618
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.031

93.678

0.609
  recA Vibrio cholerae strain A1552

65.031

93.678

0.609
  recA Ralstonia pseudosolanacearum GMI1000

65.815

89.943

0.592
  recA Glaesserella parasuis strain SC1401

58.453

100

0.586
  recA Pseudomonas stutzeri DSM 10701

62.27

93.678

0.583
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.329

95.115

0.583
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.025

90.805

0.563