Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   AB6W33_RS10870 Genome accession   NZ_CP163561
Coordinates   2099232..2100500 (+) Length   422 a.a.
NCBI ID   WP_000774760.1    Uniprot ID   Q8DX76
Organism   Streptococcus agalactiae strain GBS-B4009     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2094232..2105500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6W33_RS10835 (AB6W33_10825) prmA 2094628..2095581 (-) 954 WP_001099294.1 50S ribosomal protein L11 methyltransferase -
  AB6W33_RS10840 (AB6W33_10830) - 2095578..2096042 (-) 465 WP_306341185.1 MepB family protein -
  AB6W33_RS10845 (AB6W33_10835) - 2096160..2096876 (+) 717 WP_000859573.1 MerR family transcriptional regulator -
  AB6W33_RS10850 (AB6W33_10840) - 2096915..2097385 (-) 471 WP_000631751.1 GNAT family N-acetyltransferase -
  AB6W33_RS10855 (AB6W33_10845) - 2097357..2097815 (-) 459 WP_000350744.1 NUDIX hydrolase -
  AB6W33_RS10860 (AB6W33_10850) - 2097951..2098421 (-) 471 WP_001051348.1 DUF3013 family protein -
  AB6W33_RS10865 (AB6W33_10860) - 2098748..2099239 (+) 492 WP_000586891.1 GNAT family N-acetyltransferase -
  AB6W33_RS10870 (AB6W33_10865) rarA 2099232..2100500 (+) 1269 WP_000774760.1 replication-associated recombination protein A Machinery gene
  AB6W33_RS10880 (AB6W33_10875) - 2100955..2102076 (-) 1122 WP_000257253.1 site-specific integrase -
  AB6W33_RS10885 (AB6W33_10880) - 2102126..2102452 (-) 327 WP_001188028.1 DUF771 domain-containing protein -
  AB6W33_RS10890 (AB6W33_10885) - 2102653..2103819 (-) 1167 WP_000282289.1 XRE family transcriptional regulator -
  AB6W33_RS10895 (AB6W33_10890) - 2103840..2104547 (-) 708 WP_000418710.1 hypothetical protein -
  AB6W33_RS10900 (AB6W33_10895) - 2104673..2105452 (-) 780 WP_000048875.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46572.99 Da        Isoelectric Point: 6.3530

>NTDB_id=926841 AB6W33_RS10870 WP_000774760.1 2099232..2100500(+) (rarA) [Streptococcus agalactiae strain GBS-B4009]
MADNLALRMRPRNINEVIGQQHLVGNGKIIDRMVAANMLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKKAIQ
LAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDGSRHISLETMENSLQCSYITMDKNGDGHY
DILSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPEAQIHTVTALEAAQRIGFPEARILIANIV
VDLALSPKSNSAYLAMDAALADLRRSGNLPIPRHLRDGHYSGSKTLGNARDYKYPHAYPEKWVKQQYLPDKLVGHNYFEA
NETGKYERALGSNKERIDKLSD

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=926841 AB6W33_RS10870 WP_000774760.1 2099232..2100500(+) (rarA) [Streptococcus agalactiae strain GBS-B4009]
ATGGCTGACAATCTTGCTCTACGTATGCGTCCTCGCAATATTAATGAAGTTATCGGGCAGCAACATCTCGTTGGTAATGG
CAAAATTATTGATCGAATGGTTGCAGCTAATATGTTATCTTCCATGATCCTATATGGCCCACCAGGTATTGGGAAGACTT
CTATTGCTTCTGCTATTGCTGGTACTACTAAATATGCCTTTCGTACTTTTAATGCCACTGTTGATAGTAAAAAACGTCTT
CAAGAAATTGCAGAAGAAGCTAAATTTTCTGGTGGCTTAGTTTTATTACTTGACGAGATTCATAGACTTGACAAGACAAA
ACAAGATTTTCTTTTACCTCTACTTGAGAATGGCAATATTATTATGATTGGAGCAACAACTGAAAATCCTTTCTTTTCAG
TAACTCCTGCCATTAGAAGTAGGGTACAAATTTTTGAGTTAGAACCTCTTTCTAACGAGGATATTAAAAAAGCCATTCAG
CTAGCAATTTCCGATAAAGAACGGGGATTTCCTTTTTTAGTGACAATTGATGATGAGGCGCTAGATTTTATTGTTACCGC
CACAAATGGAGACCTACGATCTGCTTATAATTCCTTGGATCTAGCAGTCATGTCTACTTCTCCTAATGAAGATGGTAGCC
GTCATATTAGTCTAGAGACAATGGAAAATAGTCTGCAGTGTAGTTATATTACAATGGATAAAAACGGAGATGGGCATTAT
GATATCCTATCAGCCTTACAAAAATCAATTAGAGGTTCTGATGTCAATGCCAGCCTGCACTATGCCGCTCGTTTAGTAGA
AGCCGGAGATTTACCTAGTTTAGCAAGACGTTTGACCATTATTGCTTATGAAGATATCGGCTTAGCTAACCCCGAAGCAC
AAATACATACTGTGACTGCATTGGAAGCTGCCCAACGCATTGGTTTTCCAGAAGCTCGTATTCTTATTGCTAACATTGTT
GTGGATTTAGCTCTATCACCTAAATCAAATTCAGCCTATTTGGCTATGGATGCAGCTTTAGCTGATTTACGTCGTTCAGG
AAATTTACCTATTCCACGTCACCTAAGAGATGGACATTACAGCGGTAGTAAAACCTTGGGCAATGCAAGGGATTACAAGT
ACCCTCACGCCTATCCTGAAAAATGGGTTAAACAACAATACTTACCAGATAAACTAGTAGGACATAATTACTTTGAAGCC
AATGAAACTGGTAAATACGAACGCGCACTTGGTTCAAATAAAGAGCGCATTGATAAGCTCTCAGACTGA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

AAA C-terminal domain (AAA_assoc_2)

(174-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DX76

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.472

98.815

0.588