Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   AB5J89_RS23425 Genome accession   NZ_CP163523
Coordinates   5196255..5197988 (+) Length   577 a.a.
NCBI ID   WP_369358074.1    Uniprot ID   -
Organism   Streptomyces sp. cg2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5191255..5202988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J89_RS23390 (AB5J89_23390) - 5191406..5191705 (-) 300 WP_221906087.1 DUF3099 domain-containing protein -
  AB5J89_RS23395 (AB5J89_23395) - 5191884..5192171 (-) 288 WP_221906088.1 DUF1416 domain-containing protein -
  AB5J89_RS23400 (AB5J89_23400) - 5192210..5193055 (-) 846 WP_369358069.1 sulfurtransferase -
  AB5J89_RS23405 (AB5J89_23405) - 5193216..5193323 (-) 108 WP_351473977.1 Ms5788A family Cys-rich leader peptide -
  AB5J89_RS23410 (AB5J89_23410) - 5193566..5194267 (-) 702 WP_221906090.1 DUF2993 domain-containing protein -
  AB5J89_RS23415 (AB5J89_23415) - 5194523..5195800 (-) 1278 WP_369358072.1 hypothetical protein -
  AB5J89_RS23420 (AB5J89_23420) - 5195811..5196056 (-) 246 WP_221909522.1 MoaD/ThiS family protein -
  AB5J89_RS23425 (AB5J89_23425) rcrP 5196255..5197988 (+) 1734 WP_369358074.1 ABC transporter ATP-binding protein Regulator
  AB5J89_RS23430 (AB5J89_23430) rcrQ 5197985..5200024 (+) 2040 WP_313904764.1 ABC transporter ATP-binding protein Regulator
  AB5J89_RS23435 (AB5J89_23435) - 5200055..5200900 (-) 846 WP_369361057.1 alpha/beta hydrolase family protein -
  AB5J89_RS23440 (AB5J89_23440) - 5201226..5202053 (+) 828 WP_221906094.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62866.31 Da        Isoelectric Point: 5.8301

>NTDB_id=926530 AB5J89_RS23425 WP_369358074.1 5196255..5197988(+) (rcrP) [Streptomyces sp. cg2]
MLLRLARAHLLPYRRSISLVVLLQLIQTLATLYLPTLNADIIDNGVVKGDTGYIFGVGAFMIAVTVLQIACAIGAVYFGA
RTAMALGRDVRAAVFDRVQSFSAREMGGFGAPSLITRTTNDVQQVQMLVLMTFTMMVSAPIMCVGGIVMALNQDVPLSAL
LLVIVPVLGILVSLIVRRLRPLFRGVQERIDTVNRVLREQIAGIRVIRAFVRDDHERERFARANTDLYDVSMRAGRLMST
MFPLVMLIVNLSSVAVVWFGALRIDAQQMEIGALTAFLSYLMYILMSIMMATFMVMMLPRAEVCAERIQEVLATESSVTP
PAEPVTTLRRHGELELRDVEFRFPGAEQPVLRDISLIARPGETTAVIGSTGAGKSTLLGLVPRLFDATGGTVLVDGEDVR
TLAPETLASVVGLVPQKPYLFSGTVATNLRYGNPDATDEELWHALETAQARDFVERMEGGLDAPVAQGGTNVSGGQRQRL
AIARALVRKPEIYLFDDSFSALDYATDAALRAALARETDRATVVIVAQRVATIRGADRIVVLDEGRIVGTGTHGELMAGN
ETYREIVLSQLTEQEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=926530 AB5J89_RS23425 WP_369358074.1 5196255..5197988(+) (rcrP) [Streptomyces sp. cg2]
GTGTTGCTCCGACTCGCGCGGGCGCATCTGCTGCCCTACAGGCGCTCCATATCCCTCGTCGTCCTGCTCCAGCTGATCCA
GACGCTCGCCACGCTGTATCTGCCGACCCTCAACGCCGACATCATCGACAACGGTGTCGTCAAGGGCGACACCGGCTACA
TCTTCGGCGTCGGCGCCTTCATGATCGCGGTGACGGTGCTCCAGATCGCCTGCGCGATCGGCGCGGTCTACTTCGGCGCC
CGTACGGCCATGGCGCTCGGCCGGGACGTCCGGGCCGCCGTCTTCGACCGGGTGCAGTCCTTCTCCGCCCGCGAGATGGG
CGGCTTCGGCGCCCCGTCGCTGATCACCCGCACCACCAACGACGTCCAGCAGGTCCAGATGCTGGTCCTGATGACGTTCA
CGATGATGGTCTCGGCGCCGATCATGTGCGTCGGCGGCATCGTCATGGCGCTCAACCAGGACGTGCCGCTGTCGGCGCTC
CTCCTGGTCATCGTCCCGGTCCTCGGGATCCTCGTCTCACTGATCGTGCGCCGGTTGCGCCCGCTGTTCCGCGGGGTGCA
GGAGCGCATCGACACCGTCAACCGCGTGCTGCGCGAGCAGATCGCCGGCATCCGCGTCATCCGCGCCTTCGTCCGCGACG
ACCACGAACGCGAGCGGTTCGCCCGGGCCAACACCGACCTCTACGACGTCTCGATGCGCGCCGGCCGGCTGATGTCGACG
ATGTTCCCGCTGGTCATGCTGATCGTGAACCTCTCCAGCGTGGCCGTCGTGTGGTTCGGCGCGCTGCGCATCGACGCGCA
GCAGATGGAGATCGGGGCGCTGACGGCCTTCCTCAGCTATCTGATGTACATCCTGATGTCGATCATGATGGCGACGTTCA
TGGTGATGATGCTGCCGCGCGCCGAGGTCTGCGCCGAGCGCATCCAGGAGGTGCTGGCGACCGAGTCCAGCGTCACCCCG
CCCGCCGAGCCGGTCACCACGCTGCGCCGGCACGGCGAACTGGAGCTCCGGGACGTGGAGTTCCGTTTCCCCGGCGCCGA
GCAGCCGGTCCTGCGGGACATCAGCCTGATCGCCCGCCCCGGCGAGACCACCGCCGTCATCGGCTCCACCGGTGCCGGCA
AGTCCACCCTCCTCGGGCTGGTGCCACGGCTGTTCGACGCCACCGGAGGCACCGTCCTGGTCGACGGCGAGGATGTGCGC
ACCCTGGCCCCGGAGACGCTGGCCTCCGTGGTCGGCCTGGTGCCGCAGAAGCCGTACCTCTTCTCCGGGACGGTCGCCAC
CAACCTGCGGTACGGCAATCCCGACGCCACCGACGAGGAACTGTGGCACGCGCTGGAGACCGCGCAGGCCAGGGACTTCG
TCGAGCGGATGGAGGGCGGCCTGGACGCGCCGGTCGCGCAGGGCGGCACCAATGTCTCCGGCGGCCAGCGGCAGCGGCTG
GCGATCGCCCGCGCCCTGGTCCGCAAGCCCGAGATCTACCTCTTCGACGACTCCTTCTCCGCCCTCGACTACGCCACCGA
CGCGGCCCTGCGCGCCGCGCTGGCCCGGGAGACCGACCGGGCCACCGTGGTGATCGTCGCCCAGCGGGTCGCAACGATCC
GCGGCGCCGACCGGATCGTGGTCCTGGACGAGGGCCGGATCGTGGGGACCGGCACCCACGGCGAGCTGATGGCCGGCAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTCACCGAGCAGGAGGCGGCATGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-287)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.714

97.054

0.395