Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   AB5J87_RS29235 Genome accession   NZ_CP163520
Coordinates   6554654..6556018 (+) Length   454 a.a.
NCBI ID   WP_369380827.1    Uniprot ID   -
Organism   Streptomyces sp. cg36     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6549654..6561018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J87_RS29215 (AB5J87_29215) - 6550847..6551635 (-) 789 WP_369380819.1 peptidylprolyl isomerase -
  AB5J87_RS29220 (AB5J87_29220) - 6551785..6552495 (+) 711 WP_369380822.1 MBL fold metallo-hydrolase -
  AB5J87_RS29225 (AB5J87_29225) hisS 6552510..6553772 (+) 1263 WP_369380824.1 histidine--tRNA ligase -
  AB5J87_RS29230 (AB5J87_29230) - 6553964..6554596 (+) 633 WP_369380825.1 vitamin K epoxide reductase family protein -
  AB5J87_RS29235 (AB5J87_29235) rarA 6554654..6556018 (+) 1365 WP_369380827.1 replication-associated recombination protein A Machinery gene
  AB5J87_RS29240 (AB5J87_29240) - 6556047..6556736 (-) 690 WP_369383702.1 DUF2470 domain-containing protein -
  AB5J87_RS29245 (AB5J87_29245) rpsD 6556980..6557594 (+) 615 WP_188271528.1 30S ribosomal protein S4 -
  AB5J87_RS29250 (AB5J87_29250) - 6557619..6559768 (-) 2150 Protein_5759 AAA family ATPase -
  AB5J87_RS29255 (AB5J87_29255) - 6559931..6560353 (+) 423 WP_369380828.1 DUF948 domain-containing protein -
  AB5J87_RS29260 (AB5J87_29260) - 6560361..6560702 (+) 342 WP_369380831.1 DUF6167 family protein -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 48098.61 Da        Isoelectric Point: 5.9913

>NTDB_id=926475 AB5J87_RS29235 WP_369380827.1 6554654..6556018(+) (rarA) [Streptomyces sp. cg36]
MEPDLFTAAAEDRQEKDPAGSPLAVRMRPRTLDEVVGQQHLLKPGSPLRRLVGEGSGGPAGPSSVILWGPPGTGKTTLAY
VVSKATNKRFVELSAITAGVKEVRAVIDGARRAIGGFGKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYF
SVISPLLSRSLLLTLEPLTDDDLRALLRRAVGEERGLGGAVGLPEDAEAHLLRIAGGDARRALTALEAAAGAALAKEEGE
ITLQTVEETVDRAAVKYDKDGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPTAL
PTAVAAAQAVAMIGFPEAALTLSHATIALALAPKSNAATTAIFAAMEDVRKGLAGPVPPHLRDGHYKGAAKLGHAQGYVY
PHDVPGAIAAQQYAPDAVADKHYYEPTRYGAEARYADVVEKVRERLGREGGPAS

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=926475 AB5J87_RS29235 WP_369380827.1 6554654..6556018(+) (rarA) [Streptomyces sp. cg36]
GTGGAGCCCGACCTGTTCACCGCAGCCGCAGAGGACCGCCAGGAGAAAGACCCGGCGGGCAGCCCTCTGGCCGTCCGGAT
GCGCCCGCGCACCCTTGACGAAGTGGTCGGGCAGCAGCATCTGCTGAAGCCCGGCTCGCCGCTGCGGCGGCTGGTGGGGG
AGGGCAGCGGCGGCCCCGCCGGCCCCTCCTCGGTGATCCTGTGGGGCCCGCCGGGCACCGGCAAGACGACCCTGGCGTAC
GTGGTCTCCAAGGCCACCAACAAGCGCTTCGTGGAGCTCTCCGCGATCACCGCGGGCGTCAAGGAAGTGCGGGCCGTGAT
CGACGGGGCCCGCCGGGCCATCGGCGGCTTCGGCAAGGAGACCGTCCTCTTCCTCGACGAGATCCACCGCTTCTCCAAGG
CCCAGCAGGACTCCCTGCTCCCGGCCGTGGAGAACCGCTGGGTCACCCTGATCGCGGCCACCACGGAGAACCCGTACTTC
TCGGTGATCTCCCCGCTGCTCTCCCGCTCCCTGCTGCTGACCCTGGAGCCGCTCACCGACGACGACCTGCGCGCGCTGCT
GCGCCGGGCGGTCGGGGAGGAGCGCGGCCTGGGCGGCGCGGTCGGCCTGCCCGAGGACGCCGAGGCGCATCTGCTGCGGA
TCGCGGGCGGCGACGCCCGGCGCGCCCTGACCGCCCTTGAGGCGGCGGCGGGGGCGGCCCTCGCCAAGGAGGAGGGCGAG
ATCACGCTCCAGACGGTCGAGGAGACCGTCGACCGGGCGGCCGTGAAGTACGACAAGGACGGCGACCAGCACTACGACGT
GGCGAGCGCCCTGATCAAGTCGATCCGCGGCTCGGACGTGGACGCGGCGCTGCACTATCTGGCGAGGATGATCGAGGCGG
GCGAGGACCCCCGGTTCATCGCGCGCCGGCTGATGATCTCCGCGAGCGAGGACATCGGCCTCGCCGACCCGACGGCGCTG
CCGACGGCGGTCGCCGCCGCCCAGGCCGTGGCCATGATCGGCTTCCCCGAGGCGGCCCTCACACTGAGCCACGCCACCAT
CGCCCTGGCCCTGGCGCCGAAGTCCAACGCGGCGACGACCGCGATCTTCGCCGCGATGGAGGACGTCCGCAAGGGCCTGG
CCGGGCCCGTTCCGCCGCATCTGCGCGACGGCCACTACAAGGGCGCGGCCAAGCTCGGCCACGCCCAGGGGTATGTGTAC
CCGCACGACGTGCCGGGCGCGATCGCCGCCCAGCAGTACGCACCGGACGCGGTGGCCGACAAGCACTACTACGAGCCCAC
GCGGTACGGGGCGGAAGCGCGGTACGCGGACGTGGTGGAGAAGGTCCGCGAGCGGCTCGGCCGGGAAGGCGGCCCGGCCT
CCTGA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(65-169)

AAA C-terminal domain (AAA_assoc_2)

(200-276)

MgsA AAA+ ATPase C terminal (MgsA_C)

(277-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

44.522

94.493

0.421