Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   AB5J87_RS22710 Genome accession   NZ_CP163520
Coordinates   5122951..5125170 (+) Length   739 a.a.
NCBI ID   WP_369378827.1    Uniprot ID   -
Organism   Streptomyces sp. cg36     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5117951..5130170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J87_RS22690 (AB5J87_22690) - 5118742..5119899 (-) 1158 WP_369378818.1 Gfo/Idh/MocA family protein -
  AB5J87_RS22695 (AB5J87_22695) - 5120105..5121157 (+) 1053 WP_369378821.1 LacI family DNA-binding transcriptional regulator -
  AB5J87_RS22700 (AB5J87_22700) - 5121332..5122135 (+) 804 WP_369378823.1 SDR family NAD(P)-dependent oxidoreductase -
  AB5J87_RS22705 (AB5J87_22705) - 5122255..5122650 (-) 396 WP_369378825.1 DUF937 domain-containing protein -
  AB5J87_RS22710 (AB5J87_22710) recD/recD2/recDB 5122951..5125170 (+) 2220 WP_369378827.1 ATP-dependent RecD-like DNA helicase Machinery gene
  AB5J87_RS22715 (AB5J87_22715) - 5125350..5126639 (+) 1290 WP_361387685.1 citrate synthase -
  AB5J87_RS22720 (AB5J87_22720) - 5127043..5129298 (-) 2256 WP_369378830.1 heavy metal translocating P-type ATPase -
  AB5J87_RS22725 (AB5J87_22725) - 5129381..5129623 (-) 243 WP_369378832.1 heavy-metal-associated domain-containing protein -
  AB5J87_RS22730 (AB5J87_22730) - 5129746..5129949 (-) 204 WP_369378834.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 739 a.a.        Molecular weight: 79587.99 Da        Isoelectric Point: 7.3499

>NTDB_id=926460 AB5J87_RS22710 WP_369378827.1 5122951..5125170(+) (recD/recD2/recDB) [Streptomyces sp. cg36]
MSNLAVVEGVLERITYANEENGYTVARVDTGRGGGDLLTVVGSLLGAQPGESLRMEGRWGSHPQYGKQFTVENYTTVLPA
TIQGIRRYLGSGLIKGIGPRIADRIVEHFGTDTLDVIEQQPKRLVEVPGLGPKRTRLIGAAWEEQKAIKEVMVFLQGVGV
STSIAVRIYKKYGDASISVVRNQPYRLAADVWGIGFLTADRIAQAVGIPHDSPERVKAGLQYALSQSTDQGHCFLPEERL
IADSVKLLQVDTGLVIDCLGELVAEEGVVREAVPGPEGGGADRVAAVYLVPFHRAELSLAAQVVRLLRTGEDRMPGFGDV
DWDRALSWLAGRTGAELAPEQQEAVRLALTSKVAVLTGGPGCGKSFTVRSIVELARAKRAKVVLAAPTGRAAKRLAELTG
AEASTVHRLLELKPGGDAAYDRDRPLDADLVVVDEASMLDLLLANKLVKAVAPGAHLLLVGDVDQLPSVGAGEVLRDLLA
EGGPVPRVRLTRIFRQAQQSGVVTNAHRINSGIPPLTQGLSDFFHFVEEETEDAGRLAVDVAARRIPARFGLDPRRDVQV
LAPMHRGPAGAGNLNGLLQQAITPARPDLPEKRFGGRVFRVGDKVTQIRNNYEKGRNGVFNGTVGVVTSLDPDEQRLTVL
TDEDEEVPYDFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRARKLVVLVGSRKAIGQAVRTV
SAGRRFTALAHRLSGGALV

Nucleotide


Download         Length: 2220 bp        

>NTDB_id=926460 AB5J87_RS22710 WP_369378827.1 5122951..5125170(+) (recD/recD2/recDB) [Streptomyces sp. cg36]
ATGTCCAATCTCGCGGTGGTCGAAGGCGTCCTGGAGCGGATCACCTACGCCAACGAGGAGAACGGCTACACGGTCGCCCG
GGTCGACACCGGGCGCGGCGGTGGCGATCTCCTCACGGTCGTCGGCTCGCTGCTCGGCGCCCAGCCGGGCGAGTCGCTGC
GCATGGAGGGCCGCTGGGGCTCCCACCCGCAGTACGGCAAGCAGTTCACGGTGGAGAACTACACGACGGTCCTGCCCGCC
ACCATCCAGGGCATCCGGCGCTATCTCGGCTCGGGCCTCATCAAGGGCATCGGCCCCCGCATCGCCGACCGGATCGTGGA
GCACTTCGGCACCGACACCCTCGACGTCATCGAGCAGCAGCCCAAGAGGCTGGTGGAGGTCCCGGGCCTCGGCCCCAAGC
GCACCCGGCTCATCGGGGCGGCCTGGGAGGAGCAGAAGGCCATCAAGGAGGTCATGGTCTTCCTCCAGGGCGTCGGCGTC
TCCACCTCCATCGCGGTGCGGATCTACAAGAAGTACGGGGACGCGTCGATCTCCGTGGTGAGGAACCAGCCCTACCGGCT
GGCGGCCGACGTCTGGGGCATCGGCTTCCTCACCGCCGACCGCATCGCCCAGGCCGTCGGCATCCCGCACGACAGCCCCG
AGCGCGTGAAGGCCGGCCTGCAGTACGCGCTGTCCCAGTCCACCGACCAGGGCCACTGCTTCCTGCCCGAGGAGCGGCTG
ATCGCGGACTCGGTGAAGCTCCTCCAGGTCGACACCGGCCTGGTGATCGACTGCCTGGGCGAGCTGGTCGCCGAGGAGGG
GGTCGTCCGGGAGGCGGTGCCGGGGCCCGAGGGCGGCGGGGCGGACCGGGTCGCCGCCGTCTATCTGGTGCCCTTCCACC
GGGCCGAGCTCTCCCTGGCCGCCCAGGTGGTCCGGCTGCTGCGCACCGGCGAGGACCGCATGCCGGGCTTTGGTGACGTC
GACTGGGACCGGGCCCTGTCCTGGCTCGCGGGCCGCACCGGCGCCGAGCTCGCCCCGGAGCAGCAGGAGGCCGTCCGGCT
CGCCCTGACCAGCAAGGTCGCGGTGCTCACCGGCGGTCCCGGCTGCGGCAAGTCGTTCACCGTGCGCTCGATCGTGGAGC
TCGCCCGGGCCAAGCGGGCCAAGGTGGTGCTGGCCGCGCCGACCGGCCGGGCCGCCAAGCGGCTGGCCGAGCTCACCGGG
GCCGAGGCGTCCACCGTGCACCGGCTGCTGGAGCTGAAGCCGGGCGGCGACGCGGCGTACGACAGGGACCGGCCGCTCGA
CGCCGACCTGGTGGTGGTCGACGAGGCGTCGATGCTGGACCTGCTCCTCGCCAACAAACTGGTCAAGGCCGTCGCACCGG
GCGCCCATCTGCTGCTGGTGGGGGACGTGGACCAGCTGCCCTCGGTCGGCGCGGGCGAGGTGCTGCGGGACCTGCTCGCC
GAGGGCGGCCCGGTGCCCCGGGTCCGGCTCACCCGGATCTTCCGCCAGGCCCAGCAGTCCGGCGTGGTCACCAACGCCCA
CCGGATCAACTCCGGGATCCCCCCGCTCACCCAGGGCCTGAGCGACTTCTTCCACTTCGTGGAGGAGGAGACCGAGGACG
CCGGGCGGCTCGCGGTGGACGTGGCGGCGCGCCGCATCCCCGCGAGGTTCGGCCTCGACCCCCGGCGCGACGTGCAGGTG
CTCGCGCCCATGCACCGGGGCCCGGCGGGCGCCGGAAACCTCAACGGACTGCTCCAGCAGGCCATCACCCCGGCCCGCCC
CGACCTGCCGGAGAAGCGTTTCGGCGGCAGAGTGTTCCGGGTGGGCGACAAGGTGACCCAGATCCGGAACAATTACGAGA
AGGGCAGGAACGGCGTCTTCAACGGCACCGTGGGCGTGGTGACCTCCCTCGATCCGGACGAACAGCGGCTGACGGTGCTG
ACGGACGAGGACGAGGAGGTGCCGTACGACTTCGACGAGCTGGACGAGCTCGCGCACGCGTACGCGGTGACGATCCACCG
CTCGCAGGGCAGCGAGTATCCGGCGGTGGTGATCCCCGTCACCACCGGTGCCTGGATGATGCTCCAGCGAAATCTGCTCT
ACACGGCGGTGACCCGCGCCAGAAAGCTGGTGGTCCTGGTGGGGTCCCGCAAGGCGATCGGCCAGGCGGTGCGTACGGTT
TCCGCAGGCAGACGCTTTACCGCACTCGCTCATCGGCTGTCAGGGGGCGCCTTGGTGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(94-136)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(659-707)

AAA domain (AAA_30)

(336-515)

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(574-639)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.156

100

0.365