Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   VSY18_RS22400 Genome accession   NZ_CP142670
Coordinates   4312091..4314430 (-) Length   779 a.a.
NCBI ID   WP_270672373.1    Uniprot ID   -
Organism   Bacillus albus strain YK87     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4307091..4319430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VSY18_RS22370 (VSY18_22370) - 4307561..4307737 (-) 177 WP_048531368.1 hypothetical protein -
  VSY18_RS22375 (VSY18_22375) - 4307823..4308014 (-) 192 WP_048531370.1 hypothetical protein -
  VSY18_RS22380 (VSY18_22380) - 4308091..4308412 (-) 322 Protein_4358 DUF2568 domain-containing protein -
  VSY18_RS22385 (VSY18_22385) - 4308679..4309119 (-) 441 WP_071757225.1 D-tyrosyl-tRNA(Tyr) deacylase -
  VSY18_RS22390 (VSY18_22390) relA 4309137..4311320 (-) 2184 WP_001262809.1 GTP diphosphokinase -
  VSY18_RS22395 (VSY18_22395) - 4311531..4312043 (-) 513 WP_000346214.1 adenine phosphoribosyltransferase -
  VSY18_RS22400 (VSY18_22400) recJ 4312091..4314430 (-) 2340 WP_270672373.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  VSY18_RS22405 (VSY18_22405) - 4314532..4315425 (-) 894 WP_166688712.1 cation diffusion facilitator family transporter -
  VSY18_RS22410 (VSY18_22410) secDF 4315579..4317843 (-) 2265 WP_078417872.1 protein translocase subunit SecDF -
  VSY18_RS22415 (VSY18_22415) - 4318114..4318398 (-) 285 WP_048531380.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 779 a.a.        Molecular weight: 88116.58 Da        Isoelectric Point: 4.9004

>NTDB_id=926340 VSY18_RS22400 WP_270672373.1 4312091..4314430(-) (recJ) [Bacillus albus strain YK87]
MLQPKTRWKEKEYNGERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTENQEFHDPFLLEGMDRTVERVNKAIQNG
EQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGYGPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKEL
GIDLIITDHHEPPPELPEALAIIHPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPEHLLEIAVIGTVADLVSLHGENRLL
VKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDATPAVHLLLSEDPEEAKELAEEIDELNKL
RKDIVKQITEEAIAEVENNFPPEDNKVLVLAKEGWNPGVIGIVASKLVERFYRPTIVLSIDPVKETAKGSARSIAGFDLF
ANLSDCRELLPHFGGHPMAAGMTLHMNDVDELRRRLNEQADTILTEEDFIPITSVDVFCKVEDVTLAAIEDMQKLAPFGV
GNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQATLDTIGFGFGAYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQ
DIAVEAWQLFDWRSMRNVEANVAELPKEKVKMVYFSEEVLNRFSLEDYKEHMMHASEVTELDDQYVVFLDLPKGTDELRE
LFKVGFPSRIYTLFYQENNHLFSTVPTREHFKWYYSFLSQKAPFSLRQYGAQLCQHKGWSKDTVNFMTQVFFELEFVTIK
DGVIFMADKKQKRDLIESNTYREKMNHLQLEKELVYSTYQQLYTWFETIRNHKEVEQLG

Nucleotide


Download         Length: 2340 bp        

>NTDB_id=926340 VSY18_RS22400 WP_270672373.1 4312091..4314430(-) (recJ) [Bacillus albus strain YK87]
GTGTTACAACCGAAGACGCGTTGGAAAGAAAAAGAATATAATGGCGAGCGAGTGAGTGAATTAGCAAGTAAATTACAATT
ATCACCACTTGTCGTTTCGTTATTCCTCGGCAGAGGATTAGATACAGAAGATAAAATTTTAGATTTTTTAAATACAGAAA
ATCAAGAATTTCATGATCCATTTTTATTAGAAGGAATGGATCGAACGGTAGAACGTGTAAATAAGGCGATTCAAAATGGA
GAGCAAATATTAATATTTGGTGACTACGATGCGGATGGAGTAAGTAGTACGACTGTGTTATATCTTGCCTTGCAAGAATT
AGGTGCAGACGTAGAATTTTATATTCCAAACCGTTTTACAGAAGGTTATGGACCAAATGAAGAAGCATTTCGCTGGGCGC
ATAGCGCAGGATTCTCACTAATTATTACTGTCGATACTGGTATCGCAGCAGTACATGAAGCGAAGGTAGCGAAGGAACTT
GGGATAGATCTTATTATTACGGATCACCATGAGCCACCACCAGAATTGCCAGAAGCACTTGCGATTATTCACCCGAAATT
AGATGGCGGTGTATATCCGTTTCACTATTTAGCGGGTGTAGGTGTTGCGTTTAAAGTTGCACATGCATTATTAGGTCGTG
TACCAGAACATTTATTAGAAATTGCAGTAATTGGTACGGTTGCCGATTTAGTATCACTTCACGGTGAAAATAGATTGCTA
GTGAAGCGCGGTTTAAAACATATGCGCATGACGAAAAATATTGGACTAAAGGCGTTATTTAAAGTTGCTAACGTTTCGCA
AAGTGAAATTACCGAAGAGAGTATTGGTTTCTCAATCGCACCTCGTATTAATGCTGTTGGACGTTTAGAAGATGCTACGC
CAGCTGTACATCTTTTATTATCAGAGGATCCAGAAGAAGCGAAAGAGCTGGCTGAAGAAATTGATGAGTTGAACAAATTA
CGAAAAGATATTGTAAAGCAAATTACAGAAGAAGCTATCGCTGAAGTGGAAAATAATTTCCCGCCAGAAGACAATAAAGT
ATTAGTGCTTGCAAAAGAAGGATGGAATCCAGGTGTAATTGGAATTGTCGCTTCTAAATTAGTTGAACGTTTTTATCGTC
CGACGATTGTATTAAGCATTGATCCTGTCAAGGAAACGGCAAAAGGTTCAGCACGTAGTATTGCGGGATTTGATTTGTTT
GCAAACTTGTCAGATTGTAGAGAGTTATTGCCACACTTCGGAGGGCATCCGATGGCAGCGGGAATGACGCTACATATGAA
TGATGTAGATGAATTACGCCGCCGCTTAAATGAACAAGCAGATACAATTTTAACGGAAGAAGATTTTATTCCGATTACAT
CAGTTGATGTCTTTTGTAAGGTGGAGGATGTAACACTTGCAGCAATAGAAGATATGCAAAAGTTAGCGCCATTTGGTGTT
GGAAATCCAAAACCACGTATTGCGGTTAAGGATGCAGAACTAGAAAGTATTCGAGCAATCGGATCCGACGGTTCTCATTT
GAAAATGGCTCTTCGTGATGGACAAGCAACACTGGATACAATCGGATTTGGTTTTGGTGCGTATGCGAAAGAAATTTCTC
CAGTTGCAAAGGTATCTGTAATAGGGGAAGCATCTATCAATGAATGGAATAATTTTAAGAAGCCGCAATTAATGGTACAA
GATATTGCTGTAGAGGCATGGCAATTATTTGATTGGCGTAGTATGCGTAACGTAGAAGCGAATGTAGCAGAACTTCCGAA
AGAAAAAGTAAAGATGGTGTATTTTTCTGAAGAGGTATTGAATAGATTTTCTTTAGAAGACTATAAAGAGCATATGATGC
ATGCATCAGAAGTAACTGAGTTAGATGACCAATACGTCGTGTTCCTTGATTTACCAAAAGGAACAGATGAATTACGGGAG
CTATTTAAAGTTGGGTTCCCATCGCGAATTTATACACTATTTTACCAAGAGAATAATCATTTATTTAGTACTGTTCCAAC
GAGAGAACACTTTAAATGGTACTATTCGTTCTTGAGCCAAAAAGCACCATTTTCTTTAAGACAATATGGTGCGCAACTAT
GTCAACATAAAGGTTGGTCAAAAGATACAGTAAATTTCATGACACAGGTGTTTTTTGAGTTAGAATTTGTTACAATAAAA
GATGGCGTCATTTTTATGGCAGACAAAAAACAAAAGCGTGATTTAATTGAATCGAACACATATCGTGAGAAAATGAACCA
CTTACAATTAGAAAAAGAATTGGTTTATAGCACATATCAGCAACTATATACATGGTTTGAAACGATTCGTAATCATAAAG
AAGTAGAACAGTTAGGGTAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-766)

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(315-439)

RecJ OB domain (RecJ_OB)

(455-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.842

99.358

0.525