Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   VSY18_RS22320 Genome accession   NZ_CP142670
Coordinates   4294397..4296733 (-) Length   778 a.a.
NCBI ID   WP_071757229.1    Uniprot ID   A0A1J9TWW9
Organism   Bacillus albus strain YK87     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4289397..4301733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VSY18_RS22295 (VSY18_22295) - 4292059..4292403 (+) 345 WP_000209471.1 PH domain-containing protein -
  VSY18_RS22300 (VSY18_22300) - 4292442..4293509 (-) 1068 WP_048531346.1 AI-2E family transporter -
  VSY18_RS22305 (VSY18_22305) - 4293686..4293898 (+) 213 WP_048531348.1 hypothetical protein -
  VSY18_RS22310 (VSY18_22310) - 4293934..4294062 (-) 129 WP_001053553.1 YrzQ family protein -
  VSY18_RS22315 (VSY18_22315) - 4294081..4294269 (-) 189 WP_000469281.1 hypothetical protein -
  VSY18_RS22320 (VSY18_22320) recD2 4294397..4296733 (-) 2337 WP_071757229.1 ATP-dependent RecD-like DNA helicase Machinery gene
  VSY18_RS22325 (VSY18_22325) - 4296830..4297489 (-) 660 WP_166688706.1 tetratricopeptide repeat protein -
  VSY18_RS22330 (VSY18_22330) mnmA 4297600..4298715 (-) 1116 WP_071757228.1 tRNA 2-thiouridine(34) synthase MnmA -
  VSY18_RS22335 (VSY18_22335) - 4298732..4299877 (-) 1146 WP_270672370.1 cysteine desulfurase family protein -
  VSY18_RS22340 (VSY18_22340) cymR 4299913..4300329 (-) 417 WP_000704116.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87361.81 Da        Isoelectric Point: 5.1425

>NTDB_id=926339 VSY18_RS22320 WP_071757229.1 4294397..4296733(-) (recD2) [Bacillus albus strain YK87]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPDALNGVVNKQKAQEIYETIVEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
LQLGHVYMGKDQLVRETMSLLNNQEGRVTEEDIIGCIEMMQSEGKVIIEEERIYLASLFYSEKGVVKSIRRLMNQEETPS
FPEAEVLKTLGEIEEQLNVQYAPFQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKNGTLPPDLAQNQKDRSFIGCTGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKREKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLANRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=926339 VSY18_RS22320 WP_071757229.1 4294397..4296733(-) (recD2) [Bacillus albus strain YK87]
ATGGGAAATCAACATGCAATGGATTTGTTTGAAGAAGAGAAAAAGTTTATAAAAGCACAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTTAGTATGAAAGTCATTGAAACAAATGAAACGTACGACGAAAAAAAAGTGATGA
TAAACGGTCATTTTCCCCGCATGCATGAAGATGAAGTGTTTACATTAACAGGCCATTTTAAAGATCATCCAAAGTACGGG
AAACAATATTTAGTTGAAACGTTTAAGAAAGAATTGCCGCAAACAAAAGCTGGTATGGTGCAATATTTAGCGAGTGATTT
ATTTAAAGGGATAGGAAAGCGTACAGCTGAAAAAATTGTGGACCATCTTGGGGAACATGCTATTTCTAAAATTATGGATG
ATCCTGACGCGTTAAATGGTGTTGTCAACAAGCAAAAAGCACAAGAAATATATGAGACAATTGTTGAACATCAAGGACTA
GAGAAAGTAATGAGTTTTTTAAATGGTTACGGTTTTGGAACGAAGCTTTCTATTAAAATTTACCAGCAATATAAAGAGAT
GACGTTAGAAGTAATTCGTAATAATCCATATCAGCTTATTGAAGAAGTGGATGGGATTGGATTTGGAAGAGCCGACGATA
TAGGACGTGCGTTAGGGATATCGGGTAATCATGACGACCGTGTACGTGCGGGATGTTTTTATACGCTAGAAAATGTATCA
TTGCAGCTTGGCCATGTTTATATGGGAAAAGATCAACTTGTAAGAGAAACGATGTCACTTTTAAATAATCAAGAAGGAAG
AGTGACAGAGGAAGACATTATAGGTTGCATTGAAATGATGCAAAGTGAAGGGAAAGTCATCATAGAAGAAGAACGGATAT
ATTTAGCATCGTTATTCTACTCTGAAAAAGGTGTTGTAAAGTCTATTCGTAGGCTTATGAATCAAGAGGAAACACCTTCA
TTTCCTGAAGCAGAAGTGTTAAAGACGTTAGGTGAAATTGAAGAACAACTGAATGTACAGTATGCACCATTTCAGCAAGA
AGCAATTCAAACGGCACTTCATAAACCGATGATGTTATTAACAGGTGGACCAGGAACAGGGAAAACAACAGTTATTAAAG
GAATTGTTGAAATGTATGCGTCACTTCACGGGCTATCGTTAAATCCGAATGAATACAGTGATGATAATCCATTTCCGATA
TTATTAACGGCTCCAACAGGAAGAGCGGCGAAGCGAATGAGTGAATCAACAGGGCTTCCAGCTTGTACAATTCACCGTTT
ACTTGGCTGGACGCCAGAAGGGTCTTTCCAGCGTAATGAAACGGATCCGGTACAAGGGAAATTGCTCATTATTGATGAAT
TTTCAATGGTTGATATTTGGCTTGCCAATCAGTTGTTTAAATCATTGCCGACTAACATTCAAGTTATCGTTGTAGGCGAT
GAAGATCAATTACCATCTGTAGGACCTGGACAAGTGCTGAAAGATTTATTGAATGCAGGTGCAGTTCCAACGGTAAAGCT
TACTGAAATTTATCGTCAAGCGGAGGGCTCATCAGTTATTCAACTTGCCCATGCGATAAAAAATGGAACGCTCCCGCCAG
ATTTAGCGCAAAATCAAAAAGATCGTTCATTTATCGGTTGTACAGGAGCTCAAATTGTTGAGGTTGTTAAGAAGGTTTGT
GAGAATGCTAAGACAAAAGGCTTTAGCGCAAGAGATGTACAAGTATTGGCGCCGATGTATCGTGGCCCTGCCGGTATTAA
CGTACTAAACGAAGCGTTGCAAGAAGTGTTTAATCCGAAAAGGGAAAAGAGTAAAGAAATTGCTTACGGTGATGTCGTAT
ACCGACGAGGCGATAAAGTATTGCAACTCGTTAATCAGCCAGAGAGCCAAGTGTTTAATGGTGATATCGGCGAAATTGTT
TCGGTGTTTTATGCGAAAGAAAACGTTGAGCAACAAGATATGATTATCGTTTCATTTGATGGAATTGAGGTAACATATAC
AAAGCCGGACTTAAATCAAATTACACATGCTTATTGCTGTTCGATTCATAAATCGCAAGGTAGTGAGTTTCCGATCGTGA
TTATGCCGATAGTAAAAAGTTACAATCGTATGTTACGTCGTAATTTAATTTACACTGGCATTACAAGAAGTAAGAAGTTC
CTTATTATTTGCGGAGAGGAAGCGGCTTTCCAATCTGGTGTAAATCGCCTTGATGATGCAATGCGTCAAACGACTTTAGC
AAATCGCTTGCAAGAATCACAAGGAGAAGTACAAATGGTAACAGTTAATGGCGAAGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(341-548)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1J9TWW9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.269

100

0.582