Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   VRS73_RS09080 Genome accession   NZ_CP142602
Coordinates   1798030..1798809 (+) Length   259 a.a.
NCBI ID   WP_003181756.1    Uniprot ID   A0A1Y0YKK2
Organism   Bacillus paralicheniformis strain A5     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1793030..1803809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VRS73_RS09060 (VRS73_09060) trmFO 1793727..1795031 (+) 1305 WP_020451382.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  VRS73_RS09065 (VRS73_09065) xerC 1795098..1796012 (+) 915 WP_020451383.1 tyrosine recombinase XerC -
  VRS73_RS09070 (VRS73_09070) hslV 1796026..1796571 (+) 546 WP_020451384.1 ATP-dependent protease subunit HslV -
  VRS73_RS09075 (VRS73_09075) hslU 1796588..1797991 (+) 1404 WP_020451385.1 HslU--HslV peptidase ATPase subunit -
  VRS73_RS09080 (VRS73_09080) codY 1798030..1798809 (+) 780 WP_003181756.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  VRS73_RS09085 (VRS73_09085) flgB 1799161..1799550 (+) 390 WP_020451387.1 flagellar basal body rod protein FlgB -
  VRS73_RS09090 (VRS73_09090) flgC 1799550..1800002 (+) 453 WP_020451388.1 flagellar basal body rod protein FlgC -
  VRS73_RS09095 (VRS73_09095) fliE 1800016..1800333 (+) 318 WP_020451389.1 flagellar hook-basal body complex protein FliE -
  VRS73_RS09100 (VRS73_09100) fliF 1800384..1801985 (+) 1602 WP_020451390.1 flagellar basal-body MS-ring/collar protein FliF -
  VRS73_RS09105 (VRS73_09105) fliG 1801999..1803015 (+) 1017 WP_020451391.1 flagellar motor switch protein FliG -
  VRS73_RS09110 (VRS73_09110) fliH 1802999..1803766 (+) 768 WP_020451392.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29073.42 Da        Isoelectric Point: 4.8196

>NTDB_id=926233 VRS73_RS09080 WP_003181756.1 1798030..1798809(+) (codY) [Bacillus paralicheniformis strain A5]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=926233 VRS73_RS09080 WP_003181756.1 1798030..1798809(+) (codY) [Bacillus paralicheniformis strain A5]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTCGTCAGCCGCAGAGGAAAGCTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGCCAGTTTCCTGAAGACTATACAAAAAGTCTGTTC
AACATTCCGGAAACTTCATCCAACCTTGACATTAACAGCGAATATACGGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACAGTCGTTCCGATCATCGGAGGAGGCGAAAGACTCGGCACCTTGATTCTGTCCCGCCTTCAGGAGA
AATTCGAGGATGACGATCTGATCCTTGCCGAATATGGCGCAACGGTCGTAGGAATGGAAATTCTCAGAGAGAAAGCTGAA
GAGATCGAAGAGGAAGCACGCAGCAAAGCGGTCGTTCAAATGGCGATCAGTTCATTATCTTACAGCGAGCTTGAAGCAAT
TGAACATATTTTTGAAGAGCTTGACGGAAATGAAGGTCTGCTTGTCGCAAGTAAAATTGCAGACCGCGTCGGCATCACCC
GCTCGGTCATTGTCAATGCGCTGCGCAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCATTAGGGATGAAAGGCACA
TACATTAAAGTCCTGAACAACAAATTTTTAATGGAATTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YKK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467