Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   VVB72_RS10840 Genome accession   NZ_CP142589
Coordinates   2166034..2166972 (-) Length   312 a.a.
NCBI ID   WP_039116239.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain C20     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2161034..2171972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VVB72_RS10815 (VVB72_10815) frr 2161150..2161707 (-) 558 WP_004254618.1 ribosome recycling factor -
  VVB72_RS10820 (VVB72_10820) pyrH 2161920..2162636 (-) 717 WP_270095156.1 UMP kinase -
  VVB72_RS10825 (VVB72_10825) - 2162721..2163173 (-) 453 WP_039116233.1 hypothetical protein -
  VVB72_RS10830 (VVB72_10830) - 2163307..2164494 (-) 1188 WP_039116236.1 acetate kinase -
  VVB72_RS10835 (VVB72_10835) - 2164651..2165838 (-) 1188 WP_039116238.1 acetate kinase -
  VVB72_RS10840 (VVB72_10840) comYH 2166034..2166972 (-) 939 WP_039116239.1 class I SAM-dependent methyltransferase Machinery gene
  VVB72_RS10845 (VVB72_10845) - 2167060..2167311 (-) 252 WP_004254583.1 DUF3165 family protein -
  VVB72_RS10850 (VVB72_10850) typA 2167412..2169244 (-) 1833 WP_025016832.1 translational GTPase TypA -
  VVB72_RS10855 (VVB72_10855) - 2169432..2169890 (-) 459 WP_012898521.1 hypothetical protein -
  VVB72_RS10860 (VVB72_10860) - 2169905..2170678 (-) 774 WP_012898522.1 hypothetical protein -
  VVB72_RS10865 (VVB72_10865) - 2171014..2171640 (-) 627 WP_033900782.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34792.98 Da        Isoelectric Point: 4.3717

>NTDB_id=926089 VVB72_RS10840 WP_039116239.1 2166034..2166972(-) (comYH) [Lactococcus lactis subsp. lactis strain C20]
MDMEKVAQGFELVVANIMLLSEKLDTDFYDAFVEQNAALLDDTDQGIVELSVNNDKLRQLNLSNKEWQKLFQFVLLKGSQ
VAPLQPNHAMTPDVIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYVGFEVDDLLLDLSASMAEIMGS
QAEFMQIDAVQKRLMEPADVVVSDLPIGFYPDDEVAKNFEVATTDGHTFAHHLLIEQSFNYLKEGSFAIFLAPEDLLTSP
QGPLLKEWISKHGSVMAVITLPKSLFNADAKAIYVLKKGPAAHATFAHPLSSLTDRESLEVFMEEFTKIVKL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=926089 VVB72_RS10840 WP_039116239.1 2166034..2166972(-) (comYH) [Lactococcus lactis subsp. lactis strain C20]
ATGGATATGGAAAAAGTGGCTCAAGGTTTTGAGCTAGTTGTTGCAAATATTATGTTATTATCTGAGAAATTGGATACAGA
TTTTTATGATGCTTTTGTAGAACAAAATGCTGCTCTTTTAGATGATACTGACCAAGGAATTGTTGAATTGTCAGTAAATA
ATGACAAACTTCGTCAGTTAAATTTATCAAATAAGGAGTGGCAAAAACTTTTTCAATTTGTTTTGTTGAAAGGGTCACAA
GTCGCACCACTTCAGCCCAATCATGCAATGACTCCAGATGTAATTGGCTTAATTTTTAATTTCATTATTGAACATCTTAA
TAAAAATTCTGAACTTCGTTTAATTGAATTTGGGTCTGGTATGGGTAATCTTGCTGAAACGCTTTTAGTTAATCTTAATA
AAAAGGTTGATTATGTAGGCTTTGAAGTTGATGATTTACTTTTAGATTTGTCTGCTTCAATGGCTGAAATTATGGGGAGT
CAGGCTGAGTTCATGCAAATTGATGCAGTACAAAAGCGTTTGATGGAACCTGCAGACGTTGTTGTCAGTGATTTACCAAT
TGGTTTTTATCCAGATGATGAAGTTGCAAAGAATTTTGAAGTTGCGACTACTGACGGACATACTTTTGCTCATCATCTTT
TGATTGAGCAATCATTTAATTATTTAAAAGAGGGTTCTTTTGCCATTTTCCTAGCTCCAGAAGATTTACTGACAAGTCCT
CAAGGACCTCTATTAAAGGAGTGGATTAGTAAACATGGGAGTGTGATGGCTGTCATCACTTTACCAAAATCACTTTTTAA
TGCTGATGCTAAGGCGATTTATGTTTTGAAAAAGGGGCCGGCTGCACATGCAACTTTTGCTCACCCTTTGTCTTCACTGA
CAGACAGAGAAAGTTTAGAAGTCTTTATGGAAGAATTTACAAAAATTGTAAAATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

48.882

100

0.49
  comYH Streptococcus mutans UA159

48.562

100

0.487