Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   AB2U05_RS27360 Genome accession   NZ_CP163445
Coordinates   6239905..6241278 (+) Length   457 a.a.
NCBI ID   WP_045700526.1    Uniprot ID   A0A0F2TBR5
Organism   Streptomyces sp. Y1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6234905..6246278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2U05_RS27340 (AB2U05_27340) aspS 6235808..6237598 (+) 1791 WP_045700534.1 aspartate--tRNA ligase -
  AB2U05_RS27345 (AB2U05_27345) - 6237754..6238212 (+) 459 WP_244178937.1 GNAT family N-acetyltransferase -
  AB2U05_RS27350 (AB2U05_27350) ppk2 6238376..6239182 (+) 807 WP_045700530.1 polyphosphate kinase 2 -
  AB2U05_RS27355 (AB2U05_27355) - 6239256..6239876 (+) 621 WP_369184507.1 hypothetical protein -
  AB2U05_RS27360 (AB2U05_27360) rarA 6239905..6241278 (+) 1374 WP_045700526.1 replication-associated recombination protein A Machinery gene
  AB2U05_RS27365 (AB2U05_27365) rpsD 6241590..6242204 (+) 615 WP_045700524.1 30S ribosomal protein S4 -
  AB2U05_RS27370 (AB2U05_27370) - 6242324..6242641 (-) 318 WP_045700521.1 tetratricopeptide repeat protein -
  AB2U05_RS27375 (AB2U05_27375) - 6242728..6244947 (-) 2220 WP_369184508.1 regulator -
  AB2U05_RS27380 (AB2U05_27380) - 6245175..6245657 (+) 483 WP_045700517.1 DUF948 domain-containing protein -
  AB2U05_RS27385 (AB2U05_27385) - 6245662..6246126 (+) 465 WP_052707559.1 DUF6167 family protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49024.44 Da        Isoelectric Point: 6.5871

>NTDB_id=925733 AB2U05_RS27360 WP_045700526.1 6239905..6241278(+) (rarA) [Streptomyces sp. Y1]
MDEPDLFTAAAEERQSREPGRAPLAVRMRPRTLDEVAGQRQLLKPGSPLRRLVASSRGPAATSSVILWGPPGTGKTTLAH
VISQAVEGRFVELSAITAGVKEVRAVIDGARRAIGMSGRETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYF
SVISPLLSRSLLLTLESLTDEDIRALLRRAVADERGLEGALELTAEAEDHLVRLAGGDARRALTTLEAAAGAALEKGEAS
ITLATTETAVNQAAVRYDKDGDQHYDVASALIKSIRGSDVDATLHYLARMIEAGEDPRFIARRLMISASEDVGLADPSAL
QTAVAAAQAVALIGFPEARIILSQAAIALALAPKSNSAYLAIDAALADVRQGLAGAVPPHLRDAHYGGAGKLGHGHGYQY
PHDLPEGIATQQYAPDAVHGKEYYRPNRRGGEVRYADTVEWTRGRLRGERRAEKKAD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=925733 AB2U05_RS27360 WP_045700526.1 6239905..6241278(+) (rarA) [Streptomyces sp. Y1]
GTGGACGAACCGGACCTCTTCACCGCCGCCGCCGAGGAACGCCAGAGCCGGGAGCCCGGCCGGGCGCCGCTGGCCGTGCG
GATGCGCCCGCGCACCCTGGACGAGGTCGCCGGGCAGCGGCAGCTGCTGAAGCCCGGCTCGCCGCTGCGCCGGCTGGTCG
CGAGCTCGCGCGGGCCGGCGGCCACCAGCTCGGTCATCCTCTGGGGGCCGCCCGGCACCGGCAAGACCACGCTCGCGCAC
GTGATCAGCCAGGCCGTGGAGGGCCGGTTCGTCGAGCTGTCCGCGATCACCGCCGGGGTCAAGGAGGTCCGGGCGGTGAT
CGACGGCGCCCGGCGGGCGATCGGCATGTCCGGCCGGGAGACGGTGCTGTTCCTGGACGAGATCCACCGCTTCTCCAAGG
CCCAGCAGGACTCGCTGCTGCCGGCCGTCGAGAACCGCTGGGTCACGCTGATCGCGGCGACCACCGAGAACCCGTACTTC
TCGGTGATCTCGCCGCTGCTCTCCCGCTCGCTGCTGCTGACCCTGGAGTCGCTGACCGACGAGGACATCCGGGCGCTGCT
GCGCCGCGCGGTGGCCGACGAGCGCGGCCTGGAGGGCGCGCTGGAGCTGACCGCGGAGGCCGAGGACCACCTGGTCCGGC
TGGCCGGCGGGGACGCCCGGCGGGCGCTCACCACGCTGGAGGCGGCGGCCGGGGCGGCGCTGGAGAAGGGTGAGGCGAGC
ATCACGCTGGCCACCACCGAGACGGCCGTGAACCAGGCGGCGGTGCGCTACGACAAGGACGGCGACCAGCACTACGACGT
GGCCAGCGCGCTGATCAAGTCGATCCGCGGCAGCGACGTCGACGCGACGCTGCACTACCTGGCCCGGATGATCGAGGCGG
GGGAGGACCCGCGGTTCATCGCCCGCCGGCTGATGATCTCGGCCAGCGAGGACGTCGGCCTGGCGGACCCGAGCGCGCTG
CAGACGGCGGTGGCGGCGGCCCAGGCGGTGGCCCTGATCGGCTTCCCGGAAGCACGGATCATCCTGTCCCAGGCGGCGAT
CGCGCTCGCCCTGGCGCCCAAGTCCAACTCGGCCTACCTGGCGATCGACGCGGCGCTGGCGGACGTCCGGCAGGGGCTGG
CGGGCGCCGTGCCGCCGCACCTGCGGGACGCGCACTACGGCGGCGCGGGCAAGCTCGGCCACGGGCACGGCTACCAGTAC
CCGCACGACCTGCCCGAGGGCATCGCGACGCAGCAGTACGCGCCGGACGCGGTGCACGGCAAGGAGTACTACCGGCCGAA
CCGGCGCGGCGGCGAGGTGCGGTACGCGGACACCGTGGAGTGGACGCGCGGGCGGCTGCGCGGGGAGCGCAGGGCGGAGA
AGAAGGCCGACTAG

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(277-441)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(28-152)

AAA C-terminal domain (AAA_assoc_2)

(199-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F2TBR5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

46.845

90.153

0.422