Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   AB2U05_RS09780 Genome accession   NZ_CP163445
Coordinates   2337997..2340231 (-) Length   744 a.a.
NCBI ID   WP_045711727.1    Uniprot ID   -
Organism   Streptomyces sp. Y1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2332997..2345231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2U05_RS09770 (AB2U05_09770) - 2335229..2335948 (-) 720 WP_045692752.1 SDR family NAD(P)-dependent oxidoreductase -
  AB2U05_RS09775 (AB2U05_09775) - 2336482..2337771 (-) 1290 WP_045692751.1 citrate synthase -
  AB2U05_RS09780 (AB2U05_09780) recD/recD2/recDB 2337997..2340231 (-) 2235 WP_045711727.1 ATP-dependent RecD-like DNA helicase Machinery gene
  AB2U05_RS09785 (AB2U05_09785) - 2340424..2341218 (+) 795 WP_369183035.1 VOC family protein -
  AB2U05_RS09790 (AB2U05_09790) - 2341295..2341747 (+) 453 WP_045692748.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 744 a.a.        Molecular weight: 80287.77 Da        Isoelectric Point: 7.3491

>NTDB_id=925674 AB2U05_RS09780 WP_045711727.1 2337997..2340231(-) (recD/recD2/recDB) [Streptomyces sp. Y1]
MSRKAQSGQQAPLQLAQVEGVLERITYANEETGYTVARVDTGRGGNDLLTVVGALLGAQVGESLRLHGRWGSHPQYGRQF
TVENYTTVLPATVQGIQRYLGSGLIKGIGPRFAERIVERFGVDTLEVIENEPGRLIEVPGLGPKRTKKIAAAWEEQKAIK
EVMVFLQGVGVSTSLAVRIYKQYGDASIGVVRNEPYKLASDVWGIGFLTADRIAQAVGIPHDSPERVKAGLQYALSQSSD
QGHCYLPEERLIADGVKLLQVDVGLVIDCLAELVAAEGVVRESVPGEGGEPITAVYLVPFHRAEISLANQLLRLLRSDTD
RMPWFGNVDWPVALEWLAKRTGAQLAPEQEQSVRLALTEKVAVLTGGPGCGKSFTVKSIVTLALAKRAKVVLAAPTGRAA
KRLAELTGAEASTVHRLLELKPGGDAAYDRDRPLDADLVVVDEASMLDLILANKLVKAVPPGAHLLFVGDVDQLPSVGAG
EVLRDLLAEGGPIPSVRLTRIFRQAQQSGVVTNAHRINEGKPPLTDGLADFFLFAEDDAERAAGLTVDVVARRIPQKFGF
DPRRDVQVLAPMHRGPAGAGNLNTLLQAAVTPAREGLAERRFGGRTFRVGDKVTQVRNNYDKGRNGVFNGTVGVVTALSA
DDQRLTVLTDEDEEVGYDFDELDELAHAYAVTIHRSQGSEYPVVVIPVTMSAWTMLQRNLLYTAVTRARKLVVLVGSRKA
IAQAVRAVSAGRRHAALDHRLATG

Nucleotide


Download         Length: 2235 bp        

>NTDB_id=925674 AB2U05_RS09780 WP_045711727.1 2337997..2340231(-) (recD/recD2/recDB) [Streptomyces sp. Y1]
GTGAGCAGGAAGGCGCAGTCGGGGCAGCAGGCTCCGCTCCAGCTCGCGCAGGTCGAGGGCGTGCTGGAGCGGATCACGTA
CGCCAACGAGGAGACCGGCTACACGGTGGCCCGGGTGGACACCGGCCGGGGCGGGAACGACCTGCTGACGGTGGTGGGGG
CGCTGCTGGGGGCGCAGGTCGGGGAGTCGCTGCGGCTGCACGGGCGGTGGGGCTCGCACCCGCAGTACGGGCGGCAGTTC
ACGGTGGAGAACTACACGACGGTGCTGCCGGCCACCGTGCAGGGCATCCAGCGGTACCTGGGCTCGGGGCTGATCAAGGG
GATCGGGCCGCGGTTCGCCGAGCGGATCGTGGAGCGGTTCGGGGTGGACACCCTGGAGGTGATCGAGAACGAGCCGGGCC
GGCTGATCGAGGTGCCGGGCCTGGGACCGAAGCGGACGAAGAAGATCGCGGCGGCCTGGGAGGAGCAGAAGGCCATCAAG
GAGGTGATGGTCTTCCTGCAGGGGGTCGGGGTGTCGACCTCGTTGGCCGTGCGGATCTACAAGCAGTACGGCGACGCCTC
GATCGGGGTGGTGAGGAACGAGCCGTACAAGCTGGCCTCGGACGTGTGGGGCATCGGCTTCCTGACGGCGGACCGGATCG
CGCAGGCGGTGGGGATCCCGCACGACAGCCCGGAGCGGGTGAAGGCCGGGCTGCAGTACGCGCTCTCGCAGAGCAGCGAC
CAGGGGCACTGCTACTTGCCGGAGGAGCGGCTGATCGCGGACGGCGTGAAGTTGCTGCAGGTGGACGTCGGGCTGGTGAT
CGACTGCCTGGCCGAACTGGTGGCGGCGGAGGGCGTGGTGCGCGAGTCGGTGCCGGGGGAGGGCGGCGAGCCGATCACGG
CGGTCTACCTGGTGCCGTTCCACCGGGCGGAGATCTCGCTGGCCAACCAGCTGCTGCGGCTGCTGCGTTCGGACACCGAC
CGGATGCCGTGGTTCGGGAACGTGGACTGGCCGGTGGCGCTGGAGTGGCTGGCGAAGCGGACCGGGGCCCAGCTGGCGCC
GGAACAGGAGCAGTCGGTGCGGCTGGCGTTGACCGAGAAGGTCGCGGTGCTGACCGGGGGGCCGGGCTGCGGCAAGTCGT
TCACGGTGAAGTCGATCGTGACGCTGGCGCTGGCGAAGCGGGCGAAGGTGGTGCTGGCGGCGCCGACCGGGCGGGCGGCG
AAGCGGCTGGCGGAGCTGACCGGGGCGGAGGCCTCGACGGTGCACCGGCTGCTGGAGCTGAAGCCGGGCGGGGACGCAGC
GTACGACCGGGACCGGCCGCTGGACGCCGACCTGGTGGTGGTGGACGAGGCCTCGATGCTGGACCTGATCCTGGCGAACA
AGCTGGTCAAGGCGGTGCCGCCGGGTGCCCACCTGCTGTTCGTGGGGGACGTGGACCAGCTGCCCTCGGTGGGGGCCGGC
GAGGTGCTGCGGGACCTGCTGGCGGAGGGCGGGCCGATCCCCTCGGTGCGGCTGACCCGGATCTTCCGGCAGGCCCAGCA
GTCGGGGGTGGTGACGAACGCGCACCGGATCAACGAGGGGAAGCCGCCGCTGACGGACGGTCTGGCGGACTTCTTCCTGT
TCGCGGAGGACGACGCCGAGCGGGCGGCCGGGCTGACGGTGGACGTGGTGGCGCGGCGGATCCCGCAGAAGTTCGGCTTC
GACCCGCGCCGGGACGTGCAGGTGCTGGCGCCGATGCACCGGGGCCCGGCCGGGGCGGGGAACCTGAACACGCTGTTGCA
GGCGGCGGTGACGCCGGCCCGGGAGGGGCTGGCCGAACGCCGTTTCGGCGGCCGTACGTTCCGGGTGGGGGACAAGGTCA
CCCAGGTCCGCAACAACTACGACAAGGGGCGCAACGGCGTCTTCAACGGCACAGTGGGTGTGGTGACCGCCCTCAGCGCG
GACGACCAGCGCCTGACGGTGCTGACCGACGAGGACGAGGAGGTGGGGTACGACTTCGACGAGCTGGACGAGCTGGCGCA
CGCGTACGCGGTGACCATCCACCGCTCGCAGGGCAGCGAGTACCCGGTCGTGGTGATTCCGGTCACGATGTCCGCTTGGA
CGATGCTCCAGCGGAATCTGCTCTACACCGCCGTGACCAGGGCCAGGAAACTCGTCGTGCTGGTCGGGTCACGGAAGGCG
ATCGCGCAGGCCGTGCGGGCCGTCAGTGCTGGTCGGCGGCATGCGGCCCTCGATCATAGGCTGGCGACTGGATGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(155-245)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(667-715)

Helix-hairpin-helix domain (HHH_5)

(105-154)

AAA domain (AAA_30)

(344-523)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(582-647)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.317

100

0.367