Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   VQZ30_RS02595 Genome accession   NZ_CP142375
Coordinates   545426..546541 (-) Length   371 a.a.
NCBI ID   WP_045361113.1    Uniprot ID   -
Organism   Microcystis aeruginosa 1339     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 540426..551541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VQZ30_RS02580 (VQZ30_02580) - 541663..543756 (-) 2094 WP_045361107.1 secretin N-terminal domain-containing protein -
  VQZ30_RS02585 (VQZ30_02585) - 543849..544649 (-) 801 WP_190381547.1 pilus assembly protein -
  VQZ30_RS02590 (VQZ30_02590) - 544646..545416 (-) 771 WP_045361110.1 PilN domain-containing protein -
  VQZ30_RS02595 (VQZ30_02595) pilM 545426..546541 (-) 1116 WP_045361113.1 type IV pilus assembly protein PilM Machinery gene
  VQZ30_RS02600 (VQZ30_02600) - 547196..548404 (+) 1209 WP_190381546.1 tetratricopeptide repeat protein -
  VQZ30_RS02605 (VQZ30_02605) - 548531..548659 (+) 129 WP_260441226.1 hypothetical protein -
  VQZ30_RS02610 (VQZ30_02610) ilvC 549189..550181 (+) 993 WP_045361115.1 ketol-acid reductoisomerase -
  VQZ30_RS02615 (VQZ30_02615) - 550178..550420 (-) 243 WP_045361117.1 hypothetical protein -
  VQZ30_RS02620 (VQZ30_02620) - 550478..551266 (-) 789 WP_045361119.1 ECF transporter S component -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 41119.07 Da        Isoelectric Point: 4.4977

>NTDB_id=925527 VQZ30_RS02595 WP_045361113.1 545426..546541(-) (pilM) [Microcystis aeruginosa 1339]
MVSFFKKLLTRKSPGVGLEITPERINVAQIAKQGQNYKLVKYCSSDIPEGIFEEGKIADSPALAQLIQELLKENQITSKQ
VATGVPMRESIIRIIPIPSELDDQELHDTVLNHEASLYLPYPREEVDLDYQKLGYFQGEDGIEKVQVLLVATRREITDAY
RSTFQQAGLQVDVLEINSFALIRTIREQLRQFSSNEAVVIVDIEFDNTEIAIVVDGVPQFSRTVPIGTFQLQNAMARALN
LPTSRSPEILLGMTIPITGFDSLSTNTGTSQVSTNAGIMALMRVLGELTDELRRSINFYVNQSEQLEIVQLLLAGPGGGI
AQLDEYFTRHLSVPTMPIDPIAALNLDINQEIPNTRRPGLGTVLGLGLREV

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=925527 VQZ30_RS02595 WP_045361113.1 545426..546541(-) (pilM) [Microcystis aeruginosa 1339]
ATGGTAAGTTTTTTTAAGAAGCTGTTGACAAGAAAATCTCCAGGTGTTGGCTTAGAGATTACCCCAGAGCGCATTAACGT
CGCTCAGATCGCCAAACAGGGACAAAACTATAAATTAGTTAAATATTGTTCGTCGGATATCCCGGAAGGCATCTTTGAGG
AGGGAAAAATCGCCGATTCCCCCGCTTTAGCGCAATTAATCCAAGAATTACTCAAGGAAAATCAAATTACTAGCAAACAA
GTCGCTACTGGTGTCCCCATGCGCGAGTCAATTATCCGGATTATCCCCATTCCCTCGGAATTGGACGATCAGGAATTGCA
CGATACAGTCTTAAATCATGAGGCCAGTTTATATCTGCCCTATCCTCGCGAGGAAGTGGATCTCGACTACCAAAAACTGG
GCTACTTTCAGGGTGAAGACGGGATTGAAAAGGTACAAGTCTTATTAGTTGCCACTCGTCGGGAAATCACCGATGCCTAT
AGGTCAACCTTCCAACAGGCAGGATTACAGGTAGATGTGCTAGAAATTAATAGTTTTGCCCTAATTCGGACAATTCGCGA
ACAGTTGCGACAATTTAGTTCCAATGAAGCCGTCGTGATTGTCGATATAGAATTTGATAACACGGAAATTGCCATCGTGG
TGGATGGAGTTCCCCAATTTTCTCGCACTGTCCCCATCGGTACTTTCCAGCTACAAAATGCCATGGCCAGGGCGCTGAAT
TTGCCCACCTCTCGCAGTCCTGAGATTCTTTTGGGGATGACAATCCCGATTACTGGCTTTGATAGTCTTAGCACCAATAC
TGGCACTTCGCAAGTCTCTACTAACGCTGGGATAATGGCACTGATGCGGGTTTTAGGAGAATTAACCGATGAATTGCGGC
GATCGATTAACTTCTATGTTAACCAAAGTGAGCAACTGGAAATCGTCCAGTTACTTTTAGCCGGTCCCGGGGGGGGAATA
GCACAACTAGACGAGTATTTTACCCGACATCTCAGCGTCCCCACCATGCCAATCGATCCGATCGCAGCGCTAAACTTAGA
TATCAATCAAGAGATTCCCAATACCCGAAGACCGGGGTTAGGAACAGTTCTCGGTTTAGGATTACGGGAGGTATAG

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(17-241)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Synechocystis sp. PCC 6803

73.784

99.73

0.736