Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   AB5J53_RS09790 Genome accession   NZ_CP163443
Coordinates   2069846..2071201 (-) Length   451 a.a.
NCBI ID   WP_369245233.1    Uniprot ID   -
Organism   Streptomyces sp. R41     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2064846..2076201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J53_RS09770 (AB5J53_09770) - 2065712..2066062 (-) 351 WP_369245230.1 DUF6167 family protein -
  AB5J53_RS09775 (AB5J53_09775) - 2066070..2066504 (-) 435 WP_189188020.1 DUF948 domain-containing protein -
  AB5J53_RS09780 (AB5J53_09780) - 2066673..2068838 (+) 2166 WP_369245231.1 AAA family ATPase -
  AB5J53_RS09785 (AB5J53_09785) rpsD 2068869..2069483 (-) 615 WP_369245232.1 30S ribosomal protein S4 -
  AB5J53_RS09790 (AB5J53_09790) rarA 2069846..2071201 (-) 1356 WP_369245233.1 replication-associated recombination protein A Machinery gene
  AB5J53_RS09795 (AB5J53_09795) - 2071261..2071896 (-) 636 WP_369245234.1 vitamin K epoxide reductase family protein -
  AB5J53_RS09800 (AB5J53_09800) - 2072036..2072889 (+) 854 Protein_1956 ABC transporter ATP-binding protein -
  AB5J53_RS09805 (AB5J53_09805) - 2072886..2073731 (+) 846 WP_369245235.1 ABC transporter permease -
  AB5J53_RS09810 (AB5J53_09810) - 2073728..2074945 (+) 1218 WP_369245236.1 sensor histidine kinase -
  AB5J53_RS09815 (AB5J53_09815) - 2074942..2075565 (+) 624 WP_369245237.1 response regulator -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 48432.96 Da        Isoelectric Point: 6.2022

>NTDB_id=925500 AB5J53_RS09790 WP_369245233.1 2069846..2071201(-) (rarA) [Streptomyces sp. R41]
MEPDLFTAAAEERQEKDPSASPLAVRMRPRTLDEVVGQQHLLKPGSPLRRLVGEGNGGPAGPSSVILWGPPGTGKTTLAY
VVSKATNKRFVELSAITAGVKEVRAVIDGARRATGGFGKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYF
SVISPLLSRSLLLTLEPLTDDDLRGLVKRALTDERGLKDAVTLPEDTEEHLLRIAGGDARRALTALEAAAGAALDKGETE
ISLQTLEETVDRAAVKYDRDGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPNAL
PIAVAAAQAVAMIGFPEAALTLSHATIALALAPKSNAATMAIGAAMEDVRKGHAGPVPLHLRDGHYKGAAKLGHAQGYVY
PHDLPEGIAAQQYAPEELKDREYYTPTRHGAEARYADAVEWTRKHLGRGKP

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=925500 AB5J53_RS09790 WP_369245233.1 2069846..2071201(-) (rarA) [Streptomyces sp. R41]
GTGGAGCCCGACCTGTTCACCGCCGCAGCAGAAGAACGCCAGGAGAAGGACCCGTCCGCCAGTCCCCTGGCGGTACGGAT
GCGCCCGCGCACCCTCGACGAAGTCGTGGGCCAGCAGCATCTGCTGAAGCCGGGATCGCCCTTGCGCAGACTCGTCGGCG
AGGGGAACGGCGGCCCGGCCGGACCGTCCTCGGTGATCCTCTGGGGTCCGCCCGGCACGGGCAAGACGACCCTCGCCTAT
GTGGTGTCCAAGGCCACCAACAAGCGCTTCGTGGAGCTGTCGGCGATCACCGCGGGCGTCAAGGAAGTACGCGCGGTCAT
CGACGGAGCACGCCGTGCCACCGGCGGCTTCGGCAAGGAGACCGTCCTCTTCCTCGACGAGATCCACCGCTTCAGCAAGG
CCCAGCAGGACTCCCTGCTGCCCGCGGTCGAGAACCGCTGGGTGACCTTGATCGCGGCGACCACCGAGAACCCGTACTTC
TCGGTGATCTCCCCCCTCCTCTCCCGCTCCCTCCTCCTCACCCTCGAACCGCTGACGGACGACGACCTGCGCGGCCTCGT
CAAGCGCGCGCTGACCGACGAGCGCGGCCTCAAGGACGCCGTCACGCTTCCCGAGGACACCGAGGAGCACCTGCTGCGGA
TCGCCGGCGGGGACGCCCGCCGCGCCCTGACCGCCCTGGAGGCCGCGGCCGGCGCCGCGCTCGACAAGGGCGAGACGGAG
ATCAGCCTCCAGACCCTGGAGGAGACCGTCGACCGCGCCGCCGTGAAGTACGACCGCGACGGCGACCAGCACTACGACGT
GGCGAGCGCGCTCATCAAGTCCATCCGCGGCTCGGACGTGGACGCGGCACTGCACTACCTGGCCCGGATGATCGAGGCCG
GTGAGGACCCCCGCTTCATCGCCCGCCGACTGATGATCTCCGCCAGCGAGGACATCGGCCTCGCCGATCCGAACGCGCTG
CCCATAGCCGTGGCCGCCGCCCAGGCCGTCGCGATGATCGGCTTCCCCGAGGCCGCGCTCACCCTCAGCCACGCCACCAT
CGCCCTCGCCCTGGCCCCGAAGTCCAACGCCGCGACGATGGCGATCGGCGCCGCCATGGAGGACGTACGCAAGGGGCACG
CGGGGCCCGTGCCGCTCCACCTGCGCGACGGGCACTACAAGGGCGCGGCCAAACTGGGGCACGCCCAGGGGTACGTGTAT
CCGCACGACCTGCCCGAAGGGATCGCCGCCCAGCAGTACGCCCCGGAGGAGCTCAAGGACCGGGAGTACTACACGCCGAC
CCGGCACGGCGCCGAGGCGCGGTACGCGGACGCGGTGGAGTGGACCAGGAAGCATCTCGGCCGGGGAAAGCCCTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(277-441)

ATPase family associated with various cellular activities (AAA) (AAA)

(65-169)

AAA C-terminal domain (AAA_assoc_2)

(199-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

45.036

91.574

0.412