Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   AB5J50_RS09660 Genome accession   NZ_CP163440
Coordinates   2046620..2047975 (-) Length   451 a.a.
NCBI ID   WP_369256717.1    Uniprot ID   -
Organism   Streptomyces sp. R35     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2041620..2052975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J50_RS09640 (AB5J50_09640) - 2042508..2042867 (-) 360 WP_327427255.1 DUF6167 family protein -
  AB5J50_RS09645 (AB5J50_09645) - 2042875..2043333 (-) 459 WP_327427256.1 DUF948 domain-containing protein -
  AB5J50_RS09650 (AB5J50_09650) - 2043470..2045647 (+) 2178 WP_369256715.1 regulator -
  AB5J50_RS09655 (AB5J50_09655) rpsD 2045687..2046301 (-) 615 WP_019066381.1 30S ribosomal protein S4 -
  AB5J50_RS09660 (AB5J50_09660) rarA 2046620..2047975 (-) 1356 WP_369256717.1 replication-associated recombination protein A Machinery gene
  AB5J50_RS09665 (AB5J50_09665) - 2048044..2048679 (-) 636 WP_369256719.1 vitamin K epoxide reductase family protein -
  AB5J50_RS09670 (AB5J50_09670) - 2048819..2049685 (+) 867 WP_369256721.1 ABC transporter ATP-binding protein -
  AB5J50_RS09675 (AB5J50_09675) - 2049682..2050527 (+) 846 WP_327427261.1 ABC transporter permease -
  AB5J50_RS09680 (AB5J50_09680) - 2050524..2051729 (+) 1206 WP_369256723.1 sensor histidine kinase -
  AB5J50_RS09685 (AB5J50_09685) - 2051726..2052349 (+) 624 WP_330303191.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 48425.88 Da        Isoelectric Point: 6.2026

>NTDB_id=925320 AB5J50_RS09660 WP_369256717.1 2046620..2047975(-) (rarA) [Streptomyces sp. R35]
MEPDLFTAAAEERQEKDPSSSPLAVRMRPRTLDEVVGQQHLLKPGSPLRRLVGEGSGGPAGPSSVILWGPPGTGKTTLAY
VLSKATNKRFVELSAITAGVKEVRAVIDGARRATGGFGKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYF
SVISPLLSRSLLLTLEPLTDDDLRGLIKRALTDERGLKEAVTLPEDSEEHLLRIAGGDARRALTALEAAAGAALDKGEAE
ISLQTLEETVDRAAVKYDRDGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPNAL
PIAVAAAQAVAMIGFPEAALTLSHATIALALAPKSNAATTAIGAAMEDVRKGHAGPVPMHLRDGHYKGAAKLGHAQGYVY
PHDLPEGIAAQQYAPEELKDREYYTPTRHGAEARYADAVEWTRKHLGRGRS

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=925320 AB5J50_RS09660 WP_369256717.1 2046620..2047975(-) (rarA) [Streptomyces sp. R35]
GTGGAGCCCGACCTGTTCACCGCCGCAGCAGAAGAACGCCAGGAGAAGGACCCGTCCTCCAGCCCCCTGGCGGTACGGAT
GCGTCCGCGCACCCTCGACGAAGTCGTGGGCCAGCAGCATCTGCTGAAGCCGGGCTCGCCCCTGCGCAGACTCGTCGGCG
AGGGGAGCGGCGGCCCGGCCGGACCGTCCTCGGTGATCCTGTGGGGCCCGCCCGGCACCGGCAAGACCACGCTCGCGTAT
GTCCTCTCCAAGGCCACCAACAAGCGCTTCGTGGAGCTGTCCGCGATCACCGCGGGCGTCAAGGAAGTGCGCGCGGTCAT
CGACGGCGCCCGCCGCGCCACCGGCGGCTTCGGCAAGGAGACCGTCCTCTTCCTCGACGAGATCCACCGCTTCAGCAAGG
CCCAGCAGGACTCCCTGCTCCCGGCCGTCGAGAACCGCTGGGTGACGCTGATCGCGGCGACCACCGAGAACCCGTACTTC
TCGGTGATCTCGCCCCTGCTCTCCCGCTCGCTCCTGCTGACCCTCGAACCGCTCACGGACGACGACCTGCGCGGCCTCAT
CAAGCGCGCGCTCACCGACGAGCGCGGCCTCAAAGAAGCCGTCACCCTCCCCGAGGACTCCGAGGAACACCTGCTGCGGA
TCGCCGGCGGTGACGCCCGCCGCGCCCTGACCGCCCTGGAAGCCGCGGCCGGCGCCGCGCTCGACAAGGGCGAGGCGGAG
ATCAGCCTCCAGACCCTGGAGGAGACCGTCGACCGCGCGGCCGTGAAGTACGACCGCGACGGCGACCAGCACTACGACGT
GGCGAGCGCGCTCATCAAGTCCATCCGCGGCTCGGACGTGGACGCGGCGCTGCACTATCTGGCCCGGATGATCGAGGCCG
GCGAGGACCCCCGGTTCATCGCCCGCCGGCTGATGATCTCCGCCAGCGAGGACATCGGCCTCGCCGATCCGAACGCGCTG
CCGATAGCCGTGGCCGCCGCCCAGGCCGTCGCGATGATCGGTTTCCCCGAGGCAGCGCTCACCCTCAGCCACGCCACTAT
CGCCCTCGCCCTGGCGCCGAAGTCCAACGCCGCGACGACGGCGATCGGCGCCGCCATGGAGGACGTACGCAAGGGGCACG
CGGGCCCGGTGCCCATGCATCTGCGCGACGGCCACTACAAGGGCGCGGCCAAGCTGGGGCACGCCCAGGGGTATGTGTAT
CCGCACGACCTGCCCGAAGGCATCGCCGCCCAGCAGTACGCCCCGGAGGAGCTCAAGGACCGGGAGTACTACACCCCCAC
CCGGCACGGCGCCGAGGCGCGCTACGCGGACGCGGTGGAGTGGACCAGGAAGCACCTCGGTAGAGGGCGGTCCTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(199-276)

MgsA AAA+ ATPase C terminal (MgsA_C)

(277-441)

ATPase family associated with various cellular activities (AAA) (AAA)

(65-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

45.036

91.574

0.412