Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   VKP40_RS01425 Genome accession   NZ_CP142355
Coordinates   265854..266777 (+) Length   307 a.a.
NCBI ID   WP_111686167.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain A946     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 260854..271777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP40_RS01410 (VKP40_01410) amiC 262354..263856 (+) 1503 WP_011017334.1 ABC transporter permease Regulator
  VKP40_RS01415 (VKP40_01415) amiD 263856..264782 (+) 927 WP_002986004.1 oligopeptide ABC transporter permease OppC Regulator
  VKP40_RS01420 (VKP40_01420) amiE 264791..265861 (+) 1071 WP_002986002.1 ABC transporter ATP-binding protein Regulator
  VKP40_RS01425 (VKP40_01425) amiF 265854..266777 (+) 924 WP_111686167.1 ABC transporter ATP-binding protein Regulator
  VKP40_RS09080 - 266815..266904 (-) 90 WP_110002794.1 IS3 family transposase -
  VKP40_RS01430 (VKP40_01430) - 266925..267170 (-) 246 WP_030126956.1 hypothetical protein -

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34745.93 Da        Isoelectric Point: 6.5113

>NTDB_id=925261 VKP40_RS01425 WP_111686167.1 265854..266777(+) (amiF) [Streptococcus pyogenes strain A946]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFIKKGETFSLVGESGSGKTTIGRAIIGLNDTSSGQILYDGKVINGRKSKS
EANELIRKIQMIFQDPAASLNERATVDYIISEGLYNFNLFKTEEERKEKIKNMMTEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMNPEFVIADEPISALDVSVRAQVLNLLKRMQAEKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFN
NPIHPYTQSLLSAVPIPDPILERQKELVVYHPDQHDYTLDKPSMVEIKPNHFVWANQAEIEKYQKEL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=925261 VKP40_RS01425 WP_111686167.1 265854..266777(+) (amiF) [Streptococcus pyogenes strain A946]
ATGTCTGAGAAATTAGTCGAAGTAAAAGACCTAGAAATTTCCTTCGGAGAAGGAAAGAAAAAATTTGTTGCAGTTAAAAA
TGCTAATTTCTTTATTAAAAAAGGAGAAACCTTTTCTTTAGTTGGAGAATCTGGGAGTGGTAAAACAACAATTGGTCGTG
CTATTATTGGTTTGAACGATACTAGTTCAGGTCAAATTTTATACGATGGGAAAGTAATTAATGGCAGAAAATCAAAATCA
GAAGCCAATGAGCTCATTCGTAAAATTCAAATGATTTTCCAAGATCCCGCTGCTAGTTTGAATGAACGGGCAACCGTTGA
CTACATCATTTCAGAAGGTCTTTATAACTTTAATCTGTTTAAAACAGAGGAAGAACGTAAAGAAAAAATTAAGAACATGA
TGACCGAAGTTGGTTTGCTATCAGAGCATTTGACGCGCTACCCTCATGAATTTTCAGGAGGTCAACGTCAGCGGATCGGT
ATCGCTAGAGCCCTAGTAATGAACCCTGAATTCGTTATTGCTGATGAGCCGATTTCAGCTTTGGACGTTTCCGTTCGCGC
ACAGGTTTTAAACCTTCTCAAACGGATGCAAGCCGAAAAAGGTTTGACTTATCTCTTCATTGCCCATGATCTTTCAGTCG
TTCGCTTTATTTCAGATCGTATTGCGGTTATCCATAAAGGGGTTATTGTAGAAGTTGCAGAAACAGAAGAACTGTTTAAT
AACCCAATTCATCCCTACACCCAATCTTTGTTATCAGCCGTGCCTATCCCAGATCCAATTTTAGAGCGTCAAAAAGAACT
TGTTGTCTATCATCCAGACCAACATGATTATACATTAGATAAGCCATCAATGGTTGAAATCAAACCAAATCACTTTGTTT
GGGCAAACCAAGCAGAAATTGAAAAATATCAAAAAGAATTGTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

82.353

99.674

0.821
  amiF Streptococcus thermophilus LMD-9

82.026

99.674

0.818
  amiF Streptococcus salivarius strain HSISS4

82.026

99.674

0.818