Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   AB5J56_RS18435 Genome accession   NZ_CP163435
Coordinates   4148527..4149546 (-) Length   339 a.a.
NCBI ID   WP_369233842.1    Uniprot ID   -
Organism   Streptomyces sp. R21     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4143527..4154546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J56_RS18420 (AB5J56_18415) - 4145182..4145979 (-) 798 WP_369242634.1 carbohydrate ABC transporter permease -
  AB5J56_RS18425 (AB5J56_18420) - 4146063..4147037 (-) 975 WP_369233840.1 carbohydrate ABC transporter permease -
  AB5J56_RS18430 (AB5J56_18425) - 4147109..4148413 (-) 1305 WP_369233841.1 extracellular solute-binding protein -
  AB5J56_RS18435 (AB5J56_18430) cytR 4148527..4149546 (-) 1020 WP_369233842.1 LacI family DNA-binding transcriptional regulator Regulator
  AB5J56_RS18440 (AB5J56_18435) - 4149764..4153024 (-) 3261 WP_369233843.1 hypothetical protein -
  AB5J56_RS18445 (AB5J56_18440) - 4153065..4153454 (-) 390 WP_369233844.1 hypothetical protein -
  AB5J56_RS18450 (AB5J56_18445) - 4153536..4153793 (-) 258 WP_369233845.1 hypothetical protein -

Sequence

Protein


Download         Length: 339 a.a.        Molecular weight: 36171.12 Da        Isoelectric Point: 5.2505

>NTDB_id=925172 AB5J56_RS18435 WP_369233842.1 4148527..4149546(-) (cytR) [Streptomyces sp. R21]
MARESIRNKVTITEIAREAGVSVPTVSRVVNGRSDVSPETRARVEDLLRHHGYQRKPNAPGDRAALIDLVFNDLDSPWAV
EIIRGVEEVAHDSGVGTVVSAIHGASGSAQQWMTNLRARASDGVILVTSVLDPRLHDELRRLGVPLVVVDPAGSPALDMP
TVGATNWAGGMAATEHLLGLGHRRIGFIAGPPRLLCSRARLDGYRAALEGADIAVDDALIVPGDFYHSAGFDGCNTLLDL
EEPPTALFASSDQMALGAIEALRRRGLRVPEDLSVVGFDDLPEVRWSAPPLTTVRQPLADMGKLATRTVLRLAEGEEPAS
PRVELATELVVRASTAPLG

Nucleotide


Download         Length: 1020 bp        

>NTDB_id=925172 AB5J56_RS18435 WP_369233842.1 4148527..4149546(-) (cytR) [Streptomyces sp. R21]
GTGGCCCGGGAGAGCATCAGGAACAAGGTGACGATCACCGAGATCGCCCGGGAGGCCGGGGTCTCGGTGCCCACCGTGTC
CCGTGTCGTGAACGGCCGCTCCGACGTGTCGCCGGAGACCCGGGCCCGGGTCGAGGACCTGCTGCGCCACCACGGCTACC
AGCGGAAACCGAACGCCCCGGGCGACCGGGCCGCGTTGATCGACCTGGTCTTCAACGACCTCGACAGCCCCTGGGCGGTG
GAGATCATCCGCGGGGTCGAGGAGGTCGCGCACGACTCCGGGGTGGGCACGGTGGTGTCGGCCATCCACGGGGCGTCGGG
GTCGGCCCAGCAGTGGATGACCAATCTGCGGGCGCGCGCCTCGGACGGCGTGATCCTGGTGACGTCCGTGCTGGATCCCC
GGCTGCACGACGAGTTGCGGCGGCTCGGCGTGCCCCTCGTCGTGGTCGACCCGGCGGGCTCGCCGGCCCTCGACATGCCG
ACCGTCGGCGCCACCAACTGGGCCGGCGGCATGGCCGCGACGGAGCACCTGCTCGGCCTCGGGCACCGGCGGATCGGGTT
CATCGCGGGACCGCCCCGGCTGCTGTGCTCGCGGGCCCGGCTCGACGGCTACCGGGCGGCGCTGGAAGGCGCCGACATCG
CTGTCGACGACGCGCTGATCGTCCCCGGCGACTTCTACCACTCCGCCGGCTTCGACGGCTGCAACACCCTGCTCGACCTG
GAGGAACCGCCCACCGCGCTGTTCGCCTCCAGTGACCAGATGGCGCTGGGAGCGATCGAGGCGCTGCGTCGGCGGGGCCT
TCGGGTGCCCGAGGATCTGAGTGTCGTCGGTTTCGACGATCTGCCCGAAGTGCGCTGGTCCGCACCGCCGTTGACCACCG
TGCGCCAACCCCTCGCAGACATGGGCAAATTGGCGACGCGTACGGTGCTGCGGCTGGCGGAGGGCGAGGAGCCCGCGTCG
CCTCGGGTCGAGCTCGCGACCGAATTGGTGGTACGGGCGAGTACCGCCCCGCTGGGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(11-54)

Periplasmic binding protein-like domain (Peripla_BP_3)

(174-335)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

36.471

100

0.366