Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   AB5J55_RS43605 Genome accession   NZ_CP163432
Coordinates   9450478..9452220 (+) Length   580 a.a.
NCBI ID   WP_369275902.1    Uniprot ID   -
Organism   Streptomyces sp. R11     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 9445478..9457220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J55_RS43590 (AB5J55_43590) - 9446233..9447168 (-) 936 WP_369275899.1 transposase family protein -
  AB5J55_RS43595 (AB5J55_43595) - 9447301..9448992 (+) 1692 WP_369275900.1 ISAzo13 family transposase -
  AB5J55_RS43600 (AB5J55_43600) - 9449510..9449965 (-) 456 WP_369275901.1 ATP-binding protein -
  AB5J55_RS43605 (AB5J55_43605) rcrP 9450478..9452220 (+) 1743 WP_369275902.1 ABC transporter ATP-binding protein Regulator
  AB5J55_RS43610 (AB5J55_43610) - 9452205..9454127 (+) 1923 WP_369275903.1 ABC transporter ATP-binding protein -
  AB5J55_RS43615 (AB5J55_43615) - 9455411..9455950 (-) 540 Protein_8624 IS630 family transposase -
  AB5J55_RS43620 (AB5J55_43620) - 9456276..9456710 (-) 435 WP_369275904.1 acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 580 a.a.        Molecular weight: 62414.05 Da        Isoelectric Point: 8.5867

>NTDB_id=925063 AB5J55_RS43605 WP_369275902.1 9450478..9452220(+) (rcrP) [Streptomyces sp. R11]
MLIRLVWAHLGPYRRPTSWLVLLQLAQTLATLCLPVLNAAIIDHGVLRGDTNYVLRYGGLMITVAVLQSAGNVGALHFGA
RTAAAVGRDVRARVFERVQSLSVHEVGKFGAPSLLTRTTNDVHQVQMLVLMAFAFMVSAPIMCVGGLVMALCLDVPLSMV
LLAAIPVLVVAVSLIARRVRPLFRTLQERLDTVNRVLREQITGNRVIRAFVRDCYEQKRFGTVNTELAEVSLATGRLMAL
MIPIVMTVVNLSSIAVVWFGAHRIDSGGMKIGALMAFLAYLIQIVMAVMVTTFMCMMVPRAEVCAERIQEVLGTEPSVVP
PSVPVAALAGHGRLEIRDVEFRYPGAEASVLHGVHLTARPGQTLAVIGSTGSGKSTLLSLVPRLFDATEGVVLVDGVDVR
TLDPGLLARNVGLVPQRPYLFSGTVATNLRYGRPDATDEELWHALHAAQARDFVAKLEGGVDAPISQGGTNISGGQRQRL
AIAQVLVQRPAIYLFDDSFSALDSATDAALRASLARETVGATVVIVAQRVSTIRDADRIVVLDGGRVVGNGAHHELMADN
GIYREIVLSQLMGAEACPDR

Nucleotide


Download         Length: 1743 bp        

>NTDB_id=925063 AB5J55_RS43605 WP_369275902.1 9450478..9452220(+) (rcrP) [Streptomyces sp. R11]
GTGCTGATCCGACTTGTATGGGCCCACCTGGGCCCATACAGACGACCGACTTCCTGGCTCGTCCTGCTGCAACTGGCGCA
GACCCTCGCGACGCTTTGTCTGCCCGTCCTCAACGCCGCCATCATCGACCACGGTGTTCTGCGTGGGGACACGAACTATG
TCCTGCGATACGGCGGGCTGATGATCACCGTTGCCGTGTTGCAGTCCGCGGGCAACGTCGGCGCTCTGCACTTCGGCGCA
CGCACCGCCGCTGCGGTCGGCCGGGATGTGCGGGCCCGGGTCTTCGAGCGAGTACAGAGCCTCTCGGTGCACGAGGTGGG
CAAGTTCGGTGCGCCATCTCTCCTCACCCGCACCACCAATGACGTCCACCAGGTGCAGATGCTCGTGTTGATGGCGTTCG
CCTTCATGGTGTCGGCGCCGATCATGTGTGTGGGTGGGCTTGTCATGGCACTCTGCCTTGACGTGCCGCTGTCGATGGTG
CTGCTTGCTGCTATTCCCGTACTGGTGGTAGCAGTGAGTTTGATCGCGCGTCGCGTGCGGCCACTGTTTCGCACGCTGCA
GGAGCGGCTGGACACAGTGAACCGAGTGCTGCGGGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTCCGCGACT
GCTACGAGCAGAAGCGTTTCGGGACCGTCAACACTGAACTCGCCGAGGTGTCGCTGGCCACTGGTCGGCTGATGGCGCTC
ATGATCCCGATCGTGATGACGGTGGTGAACCTCTCCAGCATCGCTGTGGTGTGGTTCGGCGCGCACCGGATCGACAGCGG
CGGGATGAAGATCGGTGCGCTCATGGCTTTTCTCGCCTACCTGATACAGATCGTGATGGCCGTCATGGTGACCACCTTCA
TGTGCATGATGGTGCCGCGCGCTGAAGTATGCGCCGAGCGGATTCAGGAGGTGCTGGGCACGGAGCCCAGTGTCGTGCCG
CCATCCGTGCCGGTGGCCGCGCTTGCTGGCCACGGCCGCCTGGAGATCCGCGATGTCGAGTTCCGCTACCCGGGCGCGGA
GGCGTCCGTGCTGCACGGCGTCCACCTCACAGCCCGGCCCGGCCAGACGCTTGCCGTCATCGGCTCCACAGGAAGCGGTA
AGTCGACGCTGCTGAGCCTCGTGCCGCGGCTGTTCGACGCGACTGAGGGGGTGGTGCTCGTTGACGGGGTGGACGTACGG
ACGCTGGATCCGGGACTGCTGGCGAGGAACGTGGGGCTTGTACCGCAACGGCCCTATCTCTTCTCCGGCACAGTCGCGAC
CAACCTGCGCTATGGCCGGCCCGATGCAACCGACGAGGAACTGTGGCACGCCTTGCATGCCGCCCAGGCCAGGGACTTCG
TAGCCAAGCTCGAAGGCGGAGTCGACGCTCCCATATCCCAGGGCGGAACCAATATCTCTGGAGGGCAACGTCAACGTCTG
GCCATCGCACAAGTCCTCGTGCAGCGCCCGGCGATCTACCTCTTCGACGATTCGTTCTCCGCACTGGACTCCGCGACAGA
CGCGGCGCTACGTGCTTCGCTCGCCCGCGAGACGGTCGGGGCGACCGTCGTCATCGTTGCCCAGCGGGTGTCCACCATCC
GCGATGCCGACCGGATCGTAGTGCTGGACGGGGGCAGGGTCGTTGGTAACGGCGCCCACCACGAGCTGATGGCGGACAAC
GGGATTTACCGAGAGATTGTGCTCTCGCAGTTGATGGGGGCTGAGGCGTGCCCGGACCGATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(21-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.619

89.138

0.362