Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   AB5J57_RS10900 Genome accession   NZ_CP163429
Coordinates   2466149..2467882 (+) Length   577 a.a.
NCBI ID   WP_369155854.1    Uniprot ID   -
Organism   Streptomyces sp. R02     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2461149..2472882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J57_RS10860 (AB5J57_10860) - 2461442..2462479 (+) 1038 WP_369155852.1 rod shape-determining protein -
  AB5J57_RS10865 (AB5J57_10865) - 2462651..2463322 (+) 672 WP_369155853.1 ANTAR domain-containing response regulator -
  AB5J57_RS10870 (AB5J57_10870) - 2463388..2463558 (+) 171 WP_189408311.1 hypothetical protein -
  AB5J57_RS10890 (AB5J57_10890) - 2464200..2464505 (+) 306 WP_006129687.1 hypothetical protein -
  AB5J57_RS10895 (AB5J57_10895) - 2464544..2465995 (+) 1452 WP_037816817.1 FGGY-family carbohydrate kinase -
  AB5J57_RS10900 (AB5J57_10900) rcrP 2466149..2467882 (+) 1734 WP_369155854.1 ABC transporter ATP-binding protein Regulator
  AB5J57_RS10905 (AB5J57_10905) rcrQ 2467882..2469810 (+) 1929 WP_369155855.1 ABC transporter ATP-binding protein Regulator
  AB5J57_RS10910 (AB5J57_10910) - 2469861..2471123 (-) 1263 WP_369155857.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62298.35 Da        Isoelectric Point: 6.4229

>NTDB_id=924832 AB5J57_RS10900 WP_369155854.1 2466149..2467882(+) (rcrP) [Streptomyces sp. R02]
MLIRLLRDRLRPYQRPLALLVALQFLQTCATLYLPTLNADIIDNGVVLGDTGYILGHGGLMIGISLAQVVCNVGAVYYGA
RTAAALGRDLRAAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQIQMLALMAFTLMVSAPIMCVGGVVLALGLDVPLSGV
LVAVVPVLGVCVTLIVRRLRPLFRSMQKRLDTVNRVLREQITGNRVIRAFVRDAYEQRRFHGSNTELTDVSLRAGNLLAL
MFPVVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERVQEVLDTSSSVVP
PAAPVTELRRHGHLEIRGAGIRYPGAEEPVLKAVDLVARPGEVTAVIGSTGSGKSTLLGLVPRLFDATEGEVLVDGVPVA
DVDPALLARTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQGKDFVERLEGGLNAPVAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALARETAEATVVIVAQRVATIRDADRIVVLDEGRVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=924832 AB5J57_RS10900 WP_369155854.1 2466149..2467882(+) (rcrP) [Streptomyces sp. R02]
GTGCTCATACGACTTCTTCGTGACCGCCTACGCCCCTACCAAAGACCCCTCGCCCTCCTGGTGGCCCTGCAGTTCCTCCA
GACCTGCGCCACGCTCTATCTGCCCACGCTGAACGCGGACATCATCGACAACGGCGTCGTCCTGGGTGACACCGGTTACA
TCCTGGGCCACGGCGGTCTGATGATCGGCATCTCGCTGGCGCAGGTCGTCTGCAACGTCGGCGCCGTGTACTACGGGGCC
CGGACCGCGGCGGCCCTGGGACGGGATCTGCGCGCCGCGGTGTTCGACCGGGTGCAGTCCTTCTCCGCCCGTGAGGTGGG
TCACTTCGGCGCGCCGTCGCTGATCACGCGCACGACGAACGACGTCCAGCAGATTCAGATGCTCGCCCTGATGGCGTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGCGTGGGCGGTGTGGTGCTGGCGCTCGGCCTGGACGTGCCGCTGTCCGGGGTG
CTGGTCGCGGTGGTGCCGGTGCTGGGCGTCTGCGTGACGCTGATCGTGCGCCGGCTGCGGCCGCTGTTCCGCTCCATGCA
GAAGCGGCTGGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGCGCGTTCGTGCGGGACG
CCTACGAGCAGCGCCGGTTCCACGGGTCCAACACCGAGCTGACCGACGTGTCGCTGCGCGCCGGCAATCTGCTCGCGCTG
ATGTTCCCGGTGGTCATGACGGTGGTGAACCTGTCGTCGATCGCGGTGGTGTGGTTCGGCGCGCACCGCATCGACAGCGG
CGGCATGCAGATCGGCGACCTGACGGCGTTCCTCGCCTATCTGATGCAGATCGTCATGTCGGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCCGAGCGCGTCCAGGAGGTGCTGGACACCTCCTCGAGCGTGGTGCCG
CCCGCCGCGCCCGTCACCGAGCTGCGCCGGCACGGTCACCTGGAGATCCGGGGCGCGGGCATCCGCTACCCGGGCGCCGA
GGAGCCGGTGCTGAAGGCCGTCGACCTGGTGGCGCGGCCCGGCGAGGTCACCGCCGTCATCGGCTCCACCGGCAGCGGCA
AGTCCACGCTGCTCGGGCTGGTGCCGCGGCTGTTCGACGCGACCGAGGGCGAGGTGCTGGTCGACGGGGTGCCGGTGGCG
GACGTCGACCCGGCGCTGCTCGCCCGTACCGTCGGGCTGGTGCCGCAGAAGCCGTACCTGTTCGCGGGCACGGTGGCGAC
CAACCTGCGCTACGGCAACCCGGACGCCACGGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGGCAAGGACTTCG
TGGAGCGGCTGGAGGGCGGCCTCAACGCGCCGGTCGCGCAGGGCGGGACGAACGTCTCCGGCGGTCAGCGCCAGCGCCTG
GCGATCGCCCGGACGCTGGTGCAGCGCCCGGAGATCTACCTCTTCGACGACTCGTTCTCCGCGCTCGACTACGCCACCGA
CGCGGCTCTGCGCGCGGCGCTCGCGCGGGAGACGGCCGAGGCGACGGTGGTGATCGTCGCCCAGCGGGTGGCGACCATCC
GGGACGCCGACCGGATCGTGGTGCTGGACGAGGGCCGGGTCGTCGGCACCGGACGGCATCACGAGCTGATGGCGGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCGGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.406

93.934

0.38