Detailed information NTG0092430

Bioinformatically predicted

Overview

• Name: comF
• Type: Machinery gene
• Locus tag: OCU50_RS20710
• Genome accession: NZ_AP025514
• Coordinates: 118747..119460 (-)
• Length: 237 a.a.
• NCBI ID: WP_167346758.1
• Uniprot ID: -
• Organism: Vibrio toranzoniae strain CECT 7225
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	111540..128571	118747..119460	within	0

Gene organization within MGE regions

Location: 111540..128571

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCU50_RS00500	gspI	111540..111938 (+)	399	WP_060466912.1	type II secretion system minor pseudopilin GspI	-
OCU50_RS00505	gspJ	111925..112674 (+)	750	WP_060466913.1	type II secretion system minor pseudopilin GspJ	-
OCU50_RS00510	gspK	112667..113716 (+)	1050	WP_060466914.1	type II secretion system minor pseudopilin GspK	-
OCU50_RS00515	gspL	113685..114914 (+)	1230	WP_060466915.1	type II secretion system protein GspL	-
OCU50_RS00520	-	114934..115422 (+)	489	WP_060466916.1	type II secretion system protein M	-
OCU50_RS00525	-	115424..116203 (+)	780	WP_060466917.1	type II secretion system protein N	-
OCU50_RS00530	cysQ	116323..117150 (-)	828	WP_046223426.1	3'(2'),5'-bisphosphate nucleotidase CysQ	-
OCU50_RS00535	nudE	117208..117759 (-)	552	WP_060466918.1	ADP compounds hydrolase NudE	-
OCU50_RS00540	nfuA	118053..118637 (-)	585	WP_029626881.1	Fe-S biogenesis protein NfuA	-
OCU50_RS20710	comF	118747..119460 (-)	714	WP_167346758.1	ComF family protein	Machinery gene
OCU50_RS00550	bioH	119554..120330 (+)	777	WP_060466919.1	pimeloyl-ACP methyl ester esterase BioH	-
OCU50_RS00555	-	120524..120997 (+)	474	WP_060466920.1	hypothetical protein	-
OCU50_RS00560	-	121205..123535 (-)	2331	WP_060466921.1	Tex family protein	-
OCU50_RS00565	-	123713..125008 (-)	1296	WP_060466922.1	FAD-binding oxidoreductase	-
OCU50_RS00570	nhaC	125043..126533 (-)	1491	WP_060466923.1	Na+/H+ antiporter NhaC	-
OCU50_RS00575	-	126661..127620 (-)	960	WP_060466924.1	ornithine cyclodeaminase family protein	-
OCU50_RS00580	-	127789..128571 (+)	783	WP_060466925.1	AraC family transcriptional regulator	-

Sequence

Protein

• Length: 237 a.a.
• Molecular weight: 27150.40 Da
• Isoelectric Point: 8.9135

>NTDB_id=92430 OCU50_RS20710 WP_167346758.1 118747..119460(-) (comF) [Vibrio toranzoniae strain CECT 7225]
MLSDWLQKHTPRLVTSQCHLCKLDKLPSDTHPRWCQTCLGLFCQQPRCQQCGLKTLTSVEQCGQCLSNPPPWHRLYCVGD
YVFPTAHYIQQMKYADKFWFARDLSKLLAPRIEHPAPLITSVPLHWGRYIHRGFNQSQLLAHYAAQELDVKSAVLFRRSR
STVSQQGLTKSARQINLKNAFTLRNMNFSTNNYAHVAIIDDVVTTGSTVYQLCQLLLEVGVKRIDIYCICRTPEPSG

Nucleotide

• Length: 714 bp

>NTDB_id=92430 OCU50_RS20710 WP_167346758.1 118747..119460(-) (comF) [Vibrio toranzoniae strain CECT 7225]
ATGTTATCCGATTGGCTACAAAAACACACACCGCGCCTGGTCACATCACAATGCCACCTGTGCAAACTAGACAAACTCCC
CAGCGATACTCATCCTCGGTGGTGCCAGACTTGCCTCGGTCTCTTTTGCCAACAGCCACGCTGCCAGCAATGTGGCTTGA
AAACCTTAACTAGCGTCGAACAATGTGGTCAATGTCTATCGAATCCACCACCTTGGCATCGTCTCTATTGTGTGGGTGAC
TACGTCTTTCCAACAGCACACTATATCCAACAGATGAAATACGCCGATAAATTTTGGTTTGCGCGCGATCTATCAAAACT
GTTAGCGCCACGTATTGAACACCCAGCGCCATTGATAACCAGTGTGCCTCTACATTGGGGACGGTATATTCACAGGGGCT
TTAACCAGAGTCAGTTATTAGCCCATTACGCAGCCCAAGAGTTGGACGTCAAAAGCGCGGTTTTATTTCGTCGTTCTCGT
TCAACGGTTTCGCAGCAAGGATTAACCAAGTCCGCAAGGCAGATCAATCTAAAAAACGCTTTCACGCTGCGCAATATGAA
TTTTTCAACGAACAATTATGCTCACGTCGCGATAATTGATGATGTTGTAACCACAGGCAGCACTGTGTATCAATTATGCC
AATTACTACTTGAAGTGGGCGTGAAAAGGATTGATATTTACTGCATCTGCCGCACTCCTGAGCCCTCTGGATAA

Domains

Predicted by InterproScan.

• Phosphoribosyl transferase domain (Pribosyltran) (140-234)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comF	Vibrio cholerae strain A1552	54.237	99.578	0.54
comF	Vibrio campbellii strain DS40M4	48.77	100	0.502