Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   AB0R08_RS12765 Genome accession   NZ_CP162609
Coordinates   2793719..2795086 (+) Length   455 a.a.
NCBI ID   WP_006123203.1    Uniprot ID   A0A5D4JIE7
Organism   Streptomyces sp. 1268     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2788719..2800086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R08_RS12740 - 2789374..2789993 (-) 620 Protein_2490 response regulator -
  AB0R08_RS12745 - 2789993..2791255 (-) 1263 WP_408992002.1 sensor histidine kinase -
  AB0R08_RS12750 - 2791213..2792034 (-) 822 WP_408992003.1 ABC transporter permease -
  AB0R08_RS12755 - 2792031..2792888 (-) 858 WP_408992004.1 ABC transporter ATP-binding protein -
  AB0R08_RS12760 - 2793025..2793663 (+) 639 WP_006123204.1 vitamin K epoxide reductase family protein -
  AB0R08_RS12765 rarA 2793719..2795086 (+) 1368 WP_006123203.1 replication-associated recombination protein A Machinery gene
  AB0R08_RS12770 - 2795108..2795809 (-) 702 WP_408992005.1 DUF2470 domain-containing protein -
  AB0R08_RS12775 rpsD 2796001..2796615 (+) 615 WP_006123201.1 30S ribosomal protein S4 -
  AB0R08_RS12780 - 2796633..2798846 (-) 2214 WP_408992006.1 ATP-binding protein -
  AB0R08_RS12785 - 2799067..2799522 (+) 456 WP_032768154.1 DUF948 domain-containing protein -
  AB0R08_RS12790 - 2799530..2799877 (+) 348 WP_093809283.1 DUF6167 family protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48464.76 Da        Isoelectric Point: 5.9906

>NTDB_id=924054 AB0R08_RS12765 WP_006123203.1 2793719..2795086(+) (rarA) [Streptomyces sp. 1268]
MEPDLFTAAAEDRQEKDPSSSPLAVRMRPRTLDEVVGQQHLLKPGSPLRRLVGDGGGPAGASSVILWGPPGTGKTTLAYV
VSKATNKRFVELSAITAGVKEVRAVIESARRATGGFGKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYFS
IISPLLSRSLLLTLEPLTDDDLRSLLRRALTEERGLGGAVTLPEDAEAHLLRIAGGDARRALTALEAAAGAAIATHEAEI
TLETVEATVDRAAVKYDRDGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPTALP
TAVAAAQAVAMIGFPEAALTLSHATIALALAPKSNAATLAISAAQDDVRRGLAGPVPAHLRDGHYKGAAKLGHAQGYVYP
HDVQGGIAAQQYAPDAVRDRQYYTPTRYGAEARYADVVERVRERLGRAGEGGEQE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=924054 AB0R08_RS12765 WP_006123203.1 2793719..2795086(+) (rarA) [Streptomyces sp. 1268]
GTGGAGCCCGACCTCTTTACCGCAGCCGCCGAAGACCGCCAGGAGAAGGACCCGTCCAGCAGCCCTCTCGCTGTCCGGAT
GCGTCCGCGCACTCTCGACGAGGTCGTCGGCCAGCAGCATCTGCTGAAGCCGGGCTCGCCCCTGCGCCGTCTCGTCGGCG
ACGGGGGCGGTCCGGCGGGGGCGTCGTCCGTGATCCTGTGGGGCCCGCCCGGCACCGGCAAGACGACCCTGGCGTACGTG
GTCAGCAAGGCCACCAACAAGCGTTTCGTGGAGCTCTCCGCGATCACCGCGGGCGTCAAGGAGGTCCGCGCCGTCATCGA
GAGCGCGCGTCGCGCCACCGGTGGCTTCGGCAAGGAGACCGTCCTCTTCCTGGACGAGATCCACCGCTTCTCCAAGGCCC
AGCAGGACTCCCTCCTGCCCGCCGTCGAGAACCGCTGGGTGACGCTCATCGCCGCCACCACGGAGAATCCGTACTTCTCG
ATCATCTCCCCGCTGCTCTCGCGCTCCCTGCTGCTCACCCTGGAGCCGCTGACCGACGACGACCTGCGCTCCCTGCTGCG
CCGGGCGCTGACCGAGGAGCGGGGGCTCGGCGGGGCGGTCACCCTGCCCGAGGACGCCGAGGCGCATCTGCTGCGGATCG
CCGGCGGCGATGCGCGCCGGGCGCTCACCGCGCTGGAGGCCGCCGCCGGTGCGGCCATCGCCACGCACGAGGCGGAGATC
ACGCTGGAGACGGTCGAGGCGACCGTCGACCGCGCCGCCGTGAAGTACGACCGTGACGGCGACCAGCACTACGACGTGGC
CAGCGCGCTCATCAAGTCGATCCGCGGTTCCGACGTGGACGCGGCACTGCACTATCTGGCCCGGATGATCGAGGCGGGGG
AGGACCCCCGGTTCATCGCCCGGCGGCTGATGATCTCGGCCAGCGAGGACATCGGGCTCGCGGATCCCACCGCGCTGCCG
ACGGCGGTGGCGGCAGCCCAGGCGGTCGCCATGATCGGTTTCCCGGAGGCGGCGCTCACCCTCAGCCACGCCACCATCGC
GCTGGCGCTCGCCCCCAAGTCCAACGCGGCGACGCTGGCGATCTCCGCCGCCCAGGACGATGTGCGCAGAGGGCTGGCCG
GACCCGTCCCGGCCCATCTGCGCGACGGCCACTACAAGGGCGCGGCCAAGCTCGGCCACGCCCAGGGCTATGTCTATCCG
CACGATGTGCAGGGCGGCATCGCCGCCCAGCAGTACGCCCCGGACGCCGTCCGCGACCGGCAGTACTACACACCCACCCG
CTACGGCGCCGAGGCGAGGTACGCGGACGTCGTCGAGCGCGTCCGCGAGCGCCTCGGCCGCGCCGGCGAGGGCGGCGAGC
AGGAGTAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(199-275)

ATPase family associated with various cellular activities (AAA) (AAA)

(64-168)

MgsA AAA+ ATPase C terminal (MgsA_C)

(276-441)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5D4JIE7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

44.548

94.725

0.422