Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   AB0R08_RS06425 Genome accession   NZ_CP162609
Coordinates   1406090..1408315 (+) Length   741 a.a.
NCBI ID   WP_408991376.1    Uniprot ID   -
Organism   Streptomyces sp. 1268     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1401090..1413315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R08_RS06400 - 1402274..1402843 (+) 570 WP_408991372.1 CGNR zinc finger domain-containing protein -
  AB0R08_RS06405 - 1402869..1403453 (-) 585 WP_408991373.1 hypothetical protein -
  AB0R08_RS06410 - 1403649..1404758 (+) 1110 WP_408991374.1 sensor histidine kinase -
  AB0R08_RS06415 - 1404843..1405532 (+) 690 WP_408991375.1 response regulator -
  AB0R08_RS06420 - 1405563..1405964 (-) 402 Protein_1248 MFS transporter -
  AB0R08_RS06425 recD/recD2/recDB 1406090..1408315 (+) 2226 WP_408991376.1 ATP-dependent RecD-like DNA helicase Machinery gene
  AB0R08_RS06430 - 1408531..1409829 (+) 1299 WP_006124608.1 citrate synthase -
  AB0R08_RS06435 - 1410336..1412750 (-) 2415 WP_408991377.1 heavy metal translocating P-type ATPase -
  AB0R08_RS06440 - 1412873..1413190 (-) 318 WP_408991378.1 heavy-metal-associated domain-containing protein -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 79807.28 Da        Isoelectric Point: 6.6499

>NTDB_id=924036 AB0R08_RS06425 WP_408991376.1 1406090..1408315(+) (recD/recD2/recDB) [Streptomyces sp. 1268]
MSNMAVLEGVLERITYANEENGYTVARVDTGRGAGDLLTVVGALLGAQVGESLRMEGRWGSHSQYGKQFTVENYTTVLPA
TIQGIRRYLGSGLIKGIGPVMADRITTHFGVDTLDIIEQEPKRLVEVPGLGPKRTKMIAAAWEEQKAIKEVMVFLQGVGV
STSIAVRIYKKYEDASISVVKNQPYRLAADVWGIGFLTADKIAQAVGIPHDSPERVKAGLQYALSQSSDQGHCYLPEERL
IADGVKLLQVDTGLVIECLAELAADPEGVVREKVPSPEGGEPLTAVYLVPFHRAELSLAGQIRRLLNTGEDRMPAFRDVD
WGKALAWLATRTGADLAPEQEQAVRLALSRKVAVLTGGPGCGKSFTVRSIVELARAKKAKVVLAAPTGRAAKRLSELTGA
EASTVHRLLELKPGGDAAYDRDRPLDADLVVVDEASMLDLLLANKLVKAVAPGAHLLLVGDVDQLPSVGAGEVLSDLLAE
GGPVPAVRLTRIFRQAQQSGVVTNAHRINAGQPPLTEGLSDFFLFVEDETEDAGKLAVDVAARRIPAKFGLNARRDVQVL
APMHRGPAGAGHLNGLLQQAITPGRPDLPEKRFGGRVFRVGDKVTQIRNNYDKGENGVFNGTVGVVTGLDPDEQKLTVRT
DEDEEIGYDFDELDELAHAYAMTIHRSQGSEYPAVVIPVTNSAWMMLQRNLLYTAVTRAKKLVVLVGSRKAIGQAVRTVS
AGRRCTALDFRLRGGSGEDFS

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=924036 AB0R08_RS06425 WP_408991376.1 1406090..1408315(+) (recD/recD2/recDB) [Streptomyces sp. 1268]
ATGTCCAACATGGCCGTCCTCGAAGGGGTCCTGGAGCGGATCACCTACGCCAACGAGGAGAACGGGTACACGGTCGCCCG
CGTCGACACCGGGCGCGGAGCCGGCGACCTCCTCACCGTGGTCGGTGCGCTGCTCGGCGCGCAGGTCGGTGAGTCGCTGC
GGATGGAGGGCCGTTGGGGCTCGCACTCGCAGTACGGCAAGCAGTTCACCGTGGAGAACTACACCACCGTGCTGCCCGCC
ACCATCCAGGGCATCCGCCGCTATCTGGGCTCCGGGCTGATCAAGGGCATCGGGCCGGTGATGGCCGACCGGATCACCAC
CCACTTCGGCGTCGACACCCTCGACATCATCGAGCAGGAACCGAAGCGGCTCGTCGAGGTCCCCGGCCTCGGCCCCAAGC
GCACGAAGATGATCGCGGCGGCCTGGGAGGAACAGAAGGCGATCAAGGAGGTCATGGTCTTCCTCCAGGGCGTCGGCGTC
TCCACCTCCATCGCCGTCCGGATCTACAAGAAGTACGAGGACGCCTCGATCTCCGTCGTGAAGAACCAGCCCTACCGGCT
GGCCGCCGACGTCTGGGGCATCGGCTTCCTCACGGCGGACAAGATCGCCCAGGCCGTCGGCATCCCGCACGACAGCCCCG
AGCGGGTCAAGGCCGGGCTGCAGTACGCCCTGTCCCAGTCCTCCGACCAGGGGCACTGCTATCTCCCGGAGGAACGGCTC
ATCGCGGACGGCGTCAAGCTGCTCCAGGTCGACACCGGGCTGGTCATCGAGTGCCTGGCCGAGCTGGCCGCCGATCCGGA
GGGCGTCGTACGGGAGAAGGTGCCGTCCCCCGAGGGCGGCGAGCCCCTCACGGCGGTCTACCTCGTCCCGTTCCACCGGG
CCGAGCTGTCCCTCGCCGGTCAGATCAGGCGGCTGCTGAACACCGGCGAGGACCGGATGCCCGCCTTCCGGGACGTCGAC
TGGGGCAAGGCCCTGGCCTGGCTCGCGACGCGTACGGGGGCCGATCTCGCGCCCGAGCAGGAGCAGGCCGTACGTCTCGC
GCTCAGCCGCAAGGTGGCCGTCCTGACCGGCGGCCCCGGCTGCGGGAAGTCGTTCACCGTCCGGTCGATCGTCGAGCTGG
CCCGGGCGAAGAAGGCCAAGGTGGTGCTCGCCGCCCCCACCGGGCGCGCCGCCAAACGCCTCTCCGAGCTGACCGGGGCC
GAGGCCTCCACCGTGCACCGGCTGCTGGAGCTGAAGCCGGGCGGGGACGCGGCGTACGACCGGGACCGTCCGCTGGACGC
CGATCTGGTCGTCGTCGACGAGGCGTCGATGCTCGATCTGCTGCTCGCCAACAAGCTCGTGAAGGCGGTGGCACCCGGTG
CCCACCTCCTCCTGGTGGGCGATGTGGACCAGCTGCCCTCGGTCGGCGCGGGGGAGGTGCTGAGCGATCTGCTCGCGGAG
GGCGGTCCGGTCCCCGCCGTCCGGCTCACCCGGATCTTCCGCCAGGCCCAGCAGTCCGGCGTGGTCACCAACGCGCACCG
CATCAACGCCGGACAGCCACCCCTCACCGAGGGGCTGAGCGACTTCTTCCTCTTCGTGGAGGACGAGACGGAGGACGCGG
GCAAGCTCGCCGTCGATGTCGCGGCCCGCCGCATTCCGGCCAAGTTCGGTCTCAACGCCCGCCGTGACGTGCAGGTCCTC
GCCCCGATGCACCGGGGCCCGGCCGGCGCGGGCCATCTGAACGGGCTGCTCCAGCAGGCCATCACCCCGGGCCGCCCCGA
CCTCCCCGAGAAGCGGTTCGGCGGGCGGGTCTTCCGGGTCGGCGACAAGGTCACCCAGATCCGCAACAACTACGACAAGG
GCGAGAACGGCGTCTTCAACGGCACCGTCGGCGTCGTCACCGGCCTCGACCCGGACGAGCAGAAGCTCACCGTCCGCACC
GACGAGGACGAGGAGATCGGCTACGACTTCGACGAGCTGGACGAGCTGGCCCACGCGTACGCCATGACGATCCACCGCTC
CCAGGGCAGCGAGTATCCGGCCGTCGTCATCCCCGTCACCAACAGTGCCTGGATGATGCTCCAGCGCAACCTGCTCTACA
CGGCCGTGACGAGGGCCAAGAAGCTCGTCGTGCTCGTCGGGTCCCGTAAGGCGATCGGCCAGGCGGTCCGCACGGTTTCC
GCAGGCAGACGTTGTACGGCACTGGATTTCCGGCTCCGGGGCGGCTCCGGCGAAGACTTCTCGTGA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(658-706)

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)

Helix-hairpin-helix domain (HHH_5)

(94-143)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-639)

AAA domain (AAA_30)

(336-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.256

100

0.363