Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   OCV44_RS13640 Genome accession   NZ_AP025510
Coordinates   3059221..3059934 (+) Length   237 a.a.
NCBI ID   WP_170213720.1    Uniprot ID   -
Organism   Vibrio tasmaniensis strain LMG 20012     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3054221..3064934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV44_RS13625 - 3055121..3057451 (+) 2331 WP_139684783.1 Tex family protein -
  OCV44_RS13630 - 3057703..3058176 (-) 474 WP_139684784.1 ATP-dependent Lon protease -
  OCV44_RS13635 bioH 3058351..3059127 (-) 777 WP_139684785.1 pimeloyl-ACP methyl ester esterase BioH -
  OCV44_RS13640 comF 3059221..3059934 (+) 714 WP_170213720.1 ComF family protein Machinery gene
  OCV44_RS13645 nfuA 3060044..3060628 (+) 585 WP_004735612.1 Fe-S biogenesis protein NfuA -
  OCV44_RS13650 nudE 3060942..3061493 (+) 552 WP_009848014.1 ADP compounds hydrolase NudE -
  OCV44_RS13655 cysQ 3061530..3062357 (+) 828 WP_009848015.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  OCV44_RS13660 - 3062494..3063273 (-) 780 WP_139684786.1 type II secretion system protein N -
  OCV44_RS13665 - 3063281..3063763 (-) 483 WP_102257548.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27252.65 Da        Isoelectric Point: 8.7911

>NTDB_id=92380 OCV44_RS13640 WP_170213720.1 3059221..3059934(+) (comF) [Vibrio tasmaniensis strain LMG 20012]
MLSDWLQKHTPRLVTPQCHLCKLDKLADDDHPRWCNSCLKLFEPVPRCQRCGLKTLITVDQCGQCLSQPPPWHRLYCVGD
YTFPTARYIQQMKYADKFWFARDLSKLLASRIEHPAPLITCVPLHWRRYIHRGFNQSQLLANYTAQELGVEAEVLFRRIR
STASQQGLTKSARLHNLKSAFTLRKQDFQGAIPSHVAIIDDVVTTGSTVYQLCQLLLEVGVKRIDIYCICRTPEPSG

Nucleotide


Download         Length: 714 bp        

>NTDB_id=92380 OCV44_RS13640 WP_170213720.1 3059221..3059934(+) (comF) [Vibrio tasmaniensis strain LMG 20012]
ATGTTATCCGATTGGCTACAAAAACACACACCGCGTCTGGTCACACCTCAATGCCACCTGTGTAAGCTAGATAAGCTTGC
CGACGATGATCACCCTAGATGGTGCAATTCTTGTCTCAAACTCTTTGAGCCAGTTCCTCGCTGCCAACGATGTGGCTTAA
AAACACTGATCACAGTAGATCAGTGCGGGCAATGTTTATCACAGCCTCCACCTTGGCATCGTCTCTATTGCGTTGGGGAC
TACACCTTCCCAACGGCACGTTATATCCAACAAATGAAATACGCCGATAAGTTTTGGTTTGCACGCGATCTGTCAAAGTT
ATTGGCTTCACGTATCGAGCACCCTGCTCCGCTGATCACCTGTGTCCCTTTGCATTGGCGTCGATATATTCATCGTGGCT
TTAATCAAAGTCAGCTGCTTGCTAATTACACGGCTCAAGAACTTGGCGTTGAAGCTGAGGTGCTGTTCCGTCGAATTCGC
TCAACGGCTTCTCAGCAAGGACTGACTAAATCCGCACGATTACACAATCTAAAGAGCGCTTTTACGCTTCGAAAACAAGA
CTTTCAAGGAGCTATCCCTTCTCACGTCGCGATAATTGATGATGTTGTAACCACAGGCAGTACAGTGTATCAATTATGCC
AATTACTACTTGAAGTGGGCGTGAAAAGGATTGATATTTACTGCATCTGCCGCACTCCTGAGCCCTCTGGATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

56.962

100

0.57
  comF Vibrio campbellii strain DS40M4

49.388

100

0.511

Multiple sequence alignment