Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   OCU90_RS26075 Genome accession   NZ_AP025508
Coordinates   121449..122162 (-) Length   237 a.a.
NCBI ID   WP_169798675.1    Uniprot ID   -
Organism   Vibrio splendidus strain LMG 19031     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 116449..127162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU90_RS00525 - 117611..118099 (+) 489 WP_017086954.1 type II secretion system protein M -
  OCU90_RS00530 - 118101..118880 (+) 780 WP_061023691.1 type II secretion system protein N -
  OCU90_RS00535 cysQ 119025..119852 (-) 828 WP_017109205.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  OCU90_RS00540 nudE 119889..120440 (-) 552 WP_017109204.1 ADP compounds hydrolase NudE -
  OCU90_RS00545 nfuA 120755..121339 (-) 585 WP_009848013.1 Fe-S biogenesis protein NfuA -
  OCU90_RS26075 comF 121449..122162 (-) 714 WP_169798675.1 ComF family protein Machinery gene
  OCU90_RS00555 bioH 122256..123032 (+) 777 WP_061023693.1 pimeloyl-ACP methyl ester esterase BioH -
  OCU90_RS00560 - 123208..123681 (+) 474 WP_017107878.1 hypothetical protein -
  OCU90_RS00565 - 123944..126274 (-) 2331 WP_061023695.1 Tex family protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27254.52 Da        Isoelectric Point: 9.0238

>NTDB_id=92336 OCU90_RS26075 WP_169798675.1 121449..122162(-) (comF) [Vibrio splendidus strain LMG 19031]
MLSDWLQKHTPRLVTPQCHLCKLDKSHSDAHPRWCDSCLNLFESVPRCQRCGLKTLTIVEQCGQCLSQPPPWHRLYCVGD
YTFPTARYIQQMKYADKFWFARDLSKLLASRIEHPAPLITSVPLHWRRYIHRGFNQSQLLANYTAQELGVKDEVLFRRIR
STASQQGLTKSARLHNLKSAFTLRKQDFQGTVPSHVAIIDDVVTTGSTVYQLCQLLLEVGVKRIDIYCICRTPEPSG

Nucleotide


Download         Length: 714 bp        

>NTDB_id=92336 OCU90_RS26075 WP_169798675.1 121449..122162(-) (comF) [Vibrio splendidus strain LMG 19031]
ATGTTATCTGATTGGCTACAAAAACACACACCACGTCTGGTCACACCTCAATGCCATCTGTGCAAGCTAGATAAGTCGCA
CAGCGATGCTCACCCTCGATGGTGTGATTCTTGTCTTAATCTCTTTGAGTCAGTTCCTCGCTGCCAACGATGTGGCTTGA
AAACACTGACGATCGTCGAACAGTGTGGTCAATGCTTATCTCAACCTCCACCTTGGCATCGTCTCTATTGCGTTGGGGAC
TACACCTTTCCAACAGCACGTTACATTCAACAAATGAAGTACGCCGATAAGTTTTGGTTTGCACGCGATCTGTCAAAGTT
ATTGGCTTCACGTATCGAGCACCCTGCTCCGCTGATCACCAGCGTACCTCTGCATTGGCGTCGATATATTCATCGTGGCT
TTAATCAAAGTCAGCTGCTTGCTAATTACACAGCTCAAGAACTTGGTGTTAAAGATGAGGTGCTGTTCCGTCGAATTCGC
TCAACCGCTTCTCAGCAAGGGCTAACTAAATCCGCACGATTACACAATCTAAAGAGTGCTTTTACGCTTCGAAAACAAGA
CTTTCAAGGAACTGTCCCTTCTCACGTCGCGATAATTGATGATGTTGTAACCACCGGCAGTACTGTGTATCAATTATGCC
AATTACTACTTGAAGTAGGCGTGAAAAGGATTGATATTTACTGCATCTGCCGCACTCCTGAGCCCTCTGGATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

56.78

99.578

0.565
  comF Vibrio campbellii strain DS40M4

50

100

0.515

Multiple sequence alignment