Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   VRB50_RS14670 Genome accession   NZ_CP142196
Coordinates   3330917..3333142 (-) Length   741 a.a.
NCBI ID   WP_236277538.1    Uniprot ID   -
Organism   Pseudomonas poae strain B05_3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3325917..3338142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VRB50_RS14635 (VRB50_14635) murB 3326286..3327305 (-) 1020 WP_015372388.1 UDP-N-acetylmuramate dehydrogenase -
  VRB50_RS14640 (VRB50_14640) - 3327302..3327766 (-) 465 WP_015372389.1 low molecular weight protein-tyrosine-phosphatase -
  VRB50_RS14645 (VRB50_14645) kdsB 3327766..3328530 (-) 765 WP_003232162.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  VRB50_RS14650 (VRB50_14650) - 3328527..3328712 (-) 186 WP_003174668.1 Trm112 family protein -
  VRB50_RS14655 (VRB50_14655) lpxK 3328737..3329747 (-) 1011 WP_015372390.1 tetraacyldisaccharide 4'-kinase -
  VRB50_RS14660 (VRB50_14660) - 3329747..3330175 (-) 429 WP_003232159.1 biopolymer transporter ExbD -
  VRB50_RS14665 (VRB50_14665) exbB 3330172..3330807 (-) 636 WP_015372391.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  VRB50_RS14670 (VRB50_14670) comA 3330917..3333142 (-) 2226 WP_236277538.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VRB50_RS14675 (VRB50_14675) - 3333278..3333793 (+) 516 WP_015372393.1 DUF2062 domain-containing protein -
  VRB50_RS14680 (VRB50_14680) - 3333929..3336682 (+) 2754 WP_015372394.1 response regulator -
  VRB50_RS14685 (VRB50_14685) - 3336764..3337204 (+) 441 WP_003232149.1 hypothetical protein -
  VRB50_RS14690 (VRB50_14690) - 3337201..3337602 (+) 402 WP_003232146.1 META domain-containing protein -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80322.13 Da        Isoelectric Point: 10.5498

>NTDB_id=923049 VRB50_RS14670 WP_236277538.1 3330917..3333142(-) (comA) [Pseudomonas poae strain B05_3]
MKTGMFALALGLLALRFLPALPATGWLLAMSVLALMLLPFRTFALAFFLFGVSWACISAQWALDDRLTSALDGQTRWLEG
RVVGLPQQTSSGVRFELADSRSRNARLPRRIRVSWHGGPAVHSGERWRLAVTLKRPSGLLNVHGFDHEAWLLAQRIGATG
TVKDGERLTPARNAWRDALRQRLMAVDAQGREAGLAALVLGDGSGLADEDWQVLQDTGTVHLLVISGQHVGLLAGLIYGL
IALLARYGCWPATWPWLPWACGLAFVAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGAWWPLLLALNGVLVLEPL
ASLQPGFWLSFGAVAVLILAFGGRLGPWSLWQAWTRPQWLIAIGLFPLLLILGLPISLSAPLANLIAVPWISLVVLPLAL
LGTFLLAVPLVGEVVLWLAGGALDLLFQGLALLAGYLPAWIPAEVSLGYWLVSLAGAVIVLLPGGVPFRLLGWPMLLLAV
FPPREPVPHGRAEVLQLDVGQGQAIVLRTRHHTLLYDAGPRSRATDLGARVVLPSLKKLGIASLDLMLISHADADHAGGA
AAVVRGLPVKRVVGGETDGLPGFLGTQPCLSGERWEWDGVSFELWQWPGAVDGNPKSCVLQVQANGERLLLTGDIDRAAE
RALLDSPLAQRTDWLQVPHHGSRSSSSRPFVQQLAPTSVLISRGRGNAFGHPHAQVMERYRALGSRVYDSAEHGAVRLQL
GAFQPAQVARAQRRFWREPLR

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=923049 VRB50_RS14670 WP_236277538.1 3330917..3333142(-) (comA) [Pseudomonas poae strain B05_3]
ATGAAGACAGGGATGTTCGCCTTGGCGCTGGGGTTGCTGGCCCTGCGTTTTCTACCGGCATTGCCGGCGACGGGATGGCT
GCTGGCCATGTCGGTATTGGCCTTGATGCTGTTGCCGTTTCGCACCTTCGCGCTGGCCTTTTTTCTGTTCGGTGTGAGTT
GGGCGTGCATCAGCGCGCAATGGGCGTTGGATGACCGTTTAACCTCAGCCCTGGACGGCCAGACACGCTGGCTGGAGGGA
CGGGTGGTCGGGTTGCCACAGCAAACATCCAGCGGCGTGCGCTTCGAGCTGGCCGACAGCCGGTCACGCAATGCCCGTTT
GCCCAGGCGCATCCGGGTGTCCTGGCATGGTGGACCGGCGGTGCATAGCGGCGAGCGCTGGCGGTTGGCCGTGACCCTGA
AGCGACCGTCCGGGCTGCTCAACGTTCATGGGTTCGATCACGAAGCCTGGCTGTTGGCGCAGCGTATCGGCGCGACCGGT
ACGGTAAAGGACGGCGAGCGCCTGACGCCGGCCCGCAACGCCTGGCGCGATGCGCTGCGCCAGCGCCTGATGGCGGTGGA
TGCCCAGGGCCGCGAAGCGGGATTGGCCGCGCTGGTGCTGGGTGACGGCTCCGGGCTGGCGGACGAAGACTGGCAAGTGT
TGCAGGACACCGGCACCGTGCACCTGCTGGTGATCTCCGGCCAGCACGTAGGCTTGTTGGCGGGGTTGATCTATGGGTTG
ATCGCGTTGCTGGCGCGTTATGGTTGCTGGCCCGCCACCTGGCCGTGGTTGCCCTGGGCCTGTGGGCTGGCGTTTGTTGC
AGCACTGGGTTACGGCCTGCTGGCAGGGTTCGGTGTGCCAGTGCAGCGGGCCTGCGTCATGGTGGGCCTGGTGTTGCTGT
GGCGCTTGCGCTTTCGCCATCTGGGTGCCTGGTGGCCGTTGCTGCTGGCACTCAACGGGGTGCTGGTGCTGGAGCCGTTG
GCCAGTCTGCAGCCCGGATTCTGGTTATCGTTCGGTGCCGTTGCCGTTTTGATACTGGCCTTCGGCGGGCGATTGGGCCC
CTGGAGCCTTTGGCAGGCCTGGACGCGCCCGCAGTGGTTGATCGCCATCGGTCTTTTCCCCTTGTTGTTGATACTGGGTT
TGCCGATCAGCCTGAGTGCTCCCTTGGCCAATCTGATTGCTGTTCCGTGGATCAGTCTTGTGGTGTTGCCGTTGGCATTG
CTGGGAACTTTCCTGCTGGCGGTGCCGTTGGTGGGGGAGGTCGTGCTGTGGTTGGCGGGTGGCGCATTGGACCTGTTGTT
CCAGGGTCTTGCCTTGCTGGCCGGGTACCTGCCGGCGTGGATACCGGCTGAAGTGTCTTTGGGGTACTGGCTGGTGAGTC
TGGCCGGCGCGGTGATCGTGCTGCTGCCCGGCGGCGTGCCTTTTCGGCTGTTGGGCTGGCCGATGCTGTTGCTGGCGGTG
TTTCCACCGCGCGAGCCGGTGCCCCATGGACGGGCCGAGGTTTTGCAGCTGGATGTTGGGCAGGGGCAGGCGATTGTCCT
GCGTACCCGTCATCACACCCTGCTTTACGATGCCGGCCCCCGTTCGCGGGCCACAGACCTGGGCGCGCGGGTGGTGTTGC
CGTCGCTGAAAAAACTCGGTATCGCGTCACTGGATTTGATGCTGATCAGCCACGCCGATGCCGACCATGCCGGCGGGGCG
GCCGCAGTGGTGCGAGGGCTGCCGGTCAAGCGCGTGGTGGGCGGTGAAACCGACGGCCTGCCCGGGTTTCTCGGCACTCA
ACCGTGTCTCAGTGGCGAACGCTGGGAGTGGGACGGCGTGTCATTCGAGCTGTGGCAATGGCCTGGCGCCGTCGACGGCA
ATCCGAAGTCCTGCGTGTTGCAGGTACAGGCCAACGGCGAACGGTTGCTGCTCACCGGCGATATTGATCGCGCCGCCGAG
CGTGCCTTGCTCGACTCGCCGCTGGCGCAACGCACCGACTGGCTGCAGGTCCCCCACCATGGCAGCCGCAGTTCGTCGTC
CCGGCCTTTTGTGCAGCAGTTGGCACCCACGTCGGTGCTGATCTCCCGTGGGCGTGGCAATGCATTCGGTCATCCTCATG
CCCAGGTCATGGAGCGTTACCGGGCATTGGGCAGCCGCGTGTATGACAGCGCCGAGCACGGTGCGGTGCGCCTGCAATTG
GGGGCCTTCCAGCCGGCGCAGGTTGCACGCGCGCAACGCCGGTTCTGGCGTGAACCGTTACGCTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-672)

Competence protein (Competence)

(198-461)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.501

97.031

0.587
  comA Ralstonia pseudosolanacearum GMI1000

34.268

100

0.363