Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   OCV12_RS24895 Genome accession   NZ_AP025506
Coordinates   125457..126170 (-) Length   237 a.a.
NCBI ID   WP_315972792.1    Uniprot ID   -
Organism   Vibrio pomeroyi strain LMG 20537     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 120457..131170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV12_RS00540 - 121660..122148 (+) 489 WP_261885095.1 type II secretion system protein M -
  OCV12_RS00545 - 122150..122929 (+) 780 WP_261885096.1 type II secretion system protein N -
  OCV12_RS00550 cysQ 123050..123877 (-) 828 WP_048663063.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  OCV12_RS00555 nudE 123913..124464 (-) 552 WP_176680704.1 ADP compounds hydrolase NudE -
  OCV12_RS00560 nfuA 124763..125347 (-) 585 WP_026084098.1 Fe-S biogenesis protein NfuA -
  OCV12_RS24895 comF 125457..126170 (-) 714 WP_315972792.1 ComF family protein Machinery gene
  OCV12_RS00570 bioH 126264..127040 (+) 777 WP_261885098.1 pimeloyl-ACP methyl ester esterase BioH -
  OCV12_RS00575 - 127380..127853 (+) 474 WP_017063078.1 hypothetical protein -
  OCV12_RS00580 - 128106..130436 (-) 2331 WP_261885099.1 Tex family protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27183.54 Da        Isoelectric Point: 9.0374

>NTDB_id=92291 OCV12_RS24895 WP_315972792.1 125457..126170(-) (comF) [Vibrio pomeroyi strain LMG 20537]
MLSDWLQKHTPRLVTPQCHLCKLDKCPNDTHPRWCNSCLKLFEPVPRCQRCGLKTVTTVEQCGECLSKPPPWHRLYCVGD
YTFPTAGYIHQMKYADKFWFARDLSKLLASRIEEPASLLTSVPLHWQRYIHRGFNQSELLARYTAHELNIKNAVLFRRTR
STISQQGLTKPARKSNLKGAFVLKNLNFSATDYSHVAIIDDVVTTGSTVYQLCQLLLEVGVKRIDIYCICRTPEPSG

Nucleotide


Download         Length: 714 bp        

>NTDB_id=92291 OCV12_RS24895 WP_315972792.1 125457..126170(-) (comF) [Vibrio pomeroyi strain LMG 20537]
ATGTTATCCGATTGGCTACAAAAACACACACCACGTCTGGTCACACCTCAATGCCACCTGTGTAAGCTAGATAAATGCCC
TAATGATACACATCCTCGATGGTGCAATTCTTGTCTCAAACTCTTTGAGCCAGTACCTCGCTGCCAACGATGTGGCTTAA
AAACCGTCACCACCGTTGAGCAGTGTGGTGAGTGCTTATCAAAGCCACCACCTTGGCATCGCCTCTATTGTGTCGGCGAT
TACACCTTTCCAACCGCTGGTTATATTCATCAAATGAAGTACGCAGATAAGTTCTGGTTTGCTCGCGACTTGTCGAAGTT
ATTAGCGTCACGGATTGAAGAGCCCGCATCGTTGCTGACGAGTGTCCCACTGCATTGGCAAAGGTACATTCATCGTGGCT
TTAATCAGAGTGAGTTATTGGCGCGTTACACCGCTCACGAGCTCAACATCAAAAATGCCGTTTTATTTAGACGAACCCGC
TCAACGATTTCCCAACAAGGGCTCACCAAGCCGGCAAGAAAAAGTAATCTAAAGGGCGCTTTCGTTCTGAAAAATTTAAA
CTTTTCAGCGACGGATTATTCGCACGTCGCGATAATTGATGATGTTGTAACCACAGGCAGTACTGTGTATCAATTATGCC
AATTACTACTTGAAGTAGGGGTGAAAAGGATTGATATTTACTGCATCTGCCGCACTCCTGAGCCCTCTGGATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

55.882

100

0.561
  comF Vibrio campbellii strain DS40M4

49.59

100

0.511

Multiple sequence alignment