Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   AB3434_RS04910 Genome accession   NZ_CP162454
Coordinates   975181..975954 (-) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain TUM20926     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 970181..980954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3434_RS04875 (AB3434_04875) - 970434..971204 (-) 771 WP_000473705.1 isoprenyl transferase -
  AB3434_RS04880 (AB3434_04880) frr 971577..972131 (-) 555 WP_001280006.1 ribosome recycling factor -
  AB3434_RS04885 (AB3434_04885) pyrH 972150..972872 (-) 723 WP_000057330.1 UMP kinase -
  AB3434_RS04890 (AB3434_04890) tsf 973009..973890 (-) 882 Protein_923 translation elongation factor Ts -
  AB3434_RS04895 (AB3434_04895) - 973925..974038 (-) 114 WP_001789890.1 hypothetical protein -
  AB3434_RS04900 (AB3434_04900) rpsB 974072..974839 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  AB3434_RS04905 (AB3434_04905) - 975038..975130 (-) 93 WP_031788481.1 hypothetical protein -
  AB3434_RS04910 (AB3434_04910) codY 975181..975954 (-) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  AB3434_RS04915 (AB3434_04915) hslU 975979..977382 (-) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  AB3434_RS04920 (AB3434_04920) hslV 977448..977993 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  AB3434_RS04925 (AB3434_04925) xerC 977990..978886 (-) 897 WP_001015602.1 tyrosine recombinase XerC -
  AB3434_RS04930 (AB3434_04930) trmFO 979303..980610 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=922771 AB3434_RS04910 WP_000055337.1 975181..975954(-) (codY) [Staphylococcus aureus strain TUM20926]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=922771 AB3434_RS04910 WP_000055337.1 975181..975954(-) (codY) [Staphylococcus aureus strain TUM20926]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATCCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTTCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428