Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | vsple_RS00595 | Genome accession | NZ_AP025503 |
| Coordinates | 132888..133610 (-) | Length | 240 a.a. |
| NCBI ID | WP_261883099.1 | Uniprot ID | - |
| Organism | Vibrio pelagius strain ATCC 25916 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 127888..138610
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| vsple_RS00575 | - | 128102..130300 (-) | 2199 | WP_261882364.1 | vWA domain-containing protein | - |
| vsple_RS00580 | cysQ | 130530..131357 (-) | 828 | WP_255231695.1 | 3'(2'),5'-bisphosphate nucleotidase CysQ | - |
| vsple_RS00585 | nudE | 131368..131931 (-) | 564 | WP_255231694.1 | ADP compounds hydrolase NudE | - |
| vsple_RS00590 | nfuA | 132195..132779 (-) | 585 | WP_032551117.1 | Fe-S biogenesis protein NfuA | - |
| vsple_RS00595 | comF | 132888..133610 (-) | 723 | WP_261883099.1 | ComF family protein | Machinery gene |
| vsple_RS00600 | bioH | 133702..134478 (+) | 777 | WP_261882365.1 | pimeloyl-ACP methyl ester esterase BioH | - |
| vsple_RS00605 | - | 134653..135126 (+) | 474 | WP_255231691.1 | ATP-dependent Lon protease | - |
| vsple_RS00610 | - | 135322..137643 (-) | 2322 | WP_255231690.1 | Tex family protein | - |
Sequence
Protein
Download Length: 240 a.a. Molecular weight: 27450.96 Da Isoelectric Point: 9.2106
>NTDB_id=92212 vsple_RS00595 WP_261883099.1 132888..133610(-) (comF) [Vibrio pelagius strain ATCC 25916]
MLSDWIQKHTPRLVTPQCQLCQLPKQPKDTHPKWCNSCLSQFAPQHRCQRCGIKLDIDAIVCGACLKTPPPWQRLYCVGD
YDFPLSHYVHQMKYSGQFWLCRDLVKLLANHIEQPAPIITSVPLHWRRYLHRGFNQSALLADALAHQLNSQSLALFKRQR
ATPTQQGLSKTQRQHNLRNAFSLRNKDVMKVIAKGDAHVAIMDDVVTTGSTVYQLCQLLLEVGVKRIDIYCICRTPEPAS
MLSDWIQKHTPRLVTPQCQLCQLPKQPKDTHPKWCNSCLSQFAPQHRCQRCGIKLDIDAIVCGACLKTPPPWQRLYCVGD
YDFPLSHYVHQMKYSGQFWLCRDLVKLLANHIEQPAPIITSVPLHWRRYLHRGFNQSALLADALAHQLNSQSLALFKRQR
ATPTQQGLSKTQRQHNLRNAFSLRNKDVMKVIAKGDAHVAIMDDVVTTGSTVYQLCQLLLEVGVKRIDIYCICRTPEPAS
Nucleotide
Download Length: 723 bp
>NTDB_id=92212 vsple_RS00595 WP_261883099.1 132888..133610(-) (comF) [Vibrio pelagius strain ATCC 25916]
ATGTTATCTGATTGGATCCAAAAACACACACCACGCTTGGTCACACCACAATGCCAGCTCTGTCAATTGCCAAAGCAGCC
TAAAGATACCCACCCTAAGTGGTGCAATAGCTGTCTATCTCAATTCGCCCCCCAACACCGCTGCCAACGTTGTGGTATCA
AACTCGATATTGACGCCATAGTATGTGGGGCCTGCCTCAAAACACCACCACCTTGGCAGCGGCTCTATTGTGTTGGTGAC
TACGATTTTCCTCTCAGCCACTACGTGCATCAGATGAAGTACAGTGGTCAATTTTGGTTGTGCCGAGACTTAGTCAAACT
GCTGGCAAACCATATTGAGCAACCTGCCCCTATTATCACTAGTGTGCCGCTGCATTGGCGGCGCTACCTACACCGCGGAT
TTAATCAAAGCGCGTTGCTAGCCGATGCCCTTGCCCACCAACTTAACAGCCAAAGCCTAGCGCTGTTTAAACGTCAACGT
GCCACGCCAACGCAGCAAGGGCTTAGTAAGACGCAACGCCAGCATAATCTGCGCAATGCTTTTTCTTTAAGGAACAAGGA
TGTGATGAAAGTGATAGCAAAAGGCGACGCCCATGTTGCAATAATGGATGATGTCGTCACCACAGGCAGTACTGTGTATC
AATTATGTCAATTGCTACTTGAAGTGGGCGTTAAAAGGATTGATATTTACTGCATCTGCCGCACTCCTGAACCCGCGTCT
TAG
ATGTTATCTGATTGGATCCAAAAACACACACCACGCTTGGTCACACCACAATGCCAGCTCTGTCAATTGCCAAAGCAGCC
TAAAGATACCCACCCTAAGTGGTGCAATAGCTGTCTATCTCAATTCGCCCCCCAACACCGCTGCCAACGTTGTGGTATCA
AACTCGATATTGACGCCATAGTATGTGGGGCCTGCCTCAAAACACCACCACCTTGGCAGCGGCTCTATTGTGTTGGTGAC
TACGATTTTCCTCTCAGCCACTACGTGCATCAGATGAAGTACAGTGGTCAATTTTGGTTGTGCCGAGACTTAGTCAAACT
GCTGGCAAACCATATTGAGCAACCTGCCCCTATTATCACTAGTGTGCCGCTGCATTGGCGGCGCTACCTACACCGCGGAT
TTAATCAAAGCGCGTTGCTAGCCGATGCCCTTGCCCACCAACTTAACAGCCAAAGCCTAGCGCTGTTTAAACGTCAACGT
GCCACGCCAACGCAGCAAGGGCTTAGTAAGACGCAACGCCAGCATAATCTGCGCAATGCTTTTTCTTTAAGGAACAAGGA
TGTGATGAAAGTGATAGCAAAAGGCGACGCCCATGTTGCAATAATGGATGATGTCGTCACCACAGGCAGTACTGTGTATC
AATTATGTCAATTGCTACTTGAAGTGGGCGTTAAAAGGATTGATATTTACTGCATCTGCCGCACTCCTGAACCCGCGTCT
TAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Vibrio cholerae strain A1552 |
54.772 |
100 |
0.55 |
| comF | Vibrio campbellii strain DS40M4 |
51.012 |
100 |
0.525 |