Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   OCV49_RS16100 Genome accession   NZ_AP025499
Coordinates   3533085..3533798 (+) Length   237 a.a.
NCBI ID   WP_192853260.1    Uniprot ID   -
Organism   Vibrio lentus strain LMG 21034     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3528085..3538798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV49_RS16085 - 3528820..3531150 (+) 2331 WP_192853262.1 Tex family protein -
  OCV49_RS16090 - 3531403..3531876 (-) 474 WP_017107878.1 hypothetical protein -
  OCV49_RS16095 bioH 3532215..3532991 (-) 777 WP_192853261.1 pimeloyl-ACP methyl ester esterase BioH -
  OCV49_RS16100 comF 3533085..3533798 (+) 714 WP_192853260.1 ComF family protein Machinery gene
  OCV49_RS16105 nfuA 3533908..3534492 (+) 585 WP_009848013.1 Fe-S biogenesis protein NfuA -
  OCV49_RS16110 nudE 3534806..3535357 (+) 552 WP_065106065.1 ADP compounds hydrolase NudE -
  OCV49_RS16115 cysQ 3535394..3536221 (+) 828 WP_192853259.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  OCV49_RS16120 - 3536350..3537129 (-) 780 WP_102291904.1 type II secretion system protein N -
  OCV49_RS16125 - 3537131..3537619 (-) 489 WP_017086954.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27321.56 Da        Isoelectric Point: 8.7412

>NTDB_id=92204 OCV49_RS16100 WP_192853260.1 3533085..3533798(+) (comF) [Vibrio lentus strain LMG 21034]
MLSDWLQKHTPRLVTPQCHLCKLDKSPNDAHPRWCNDCLNLFEPVPRCQRCGLKTLTTVEQCGQCLSKPPPWHRLYCVGD
YTFPTARYIQQMKYSDKFWFARDLSKLLASRIDHPAPLIASVPLHWTRYIQRSFNQSQLLANYTAQELGVKSDVLFRRNR
ATLSQQGLTKSIRLRNLNGAFTLLHRDFEATDYPHIAIIDDVVTTGSTVYQLCQLLLEVGVKRIDIYCICRTPEPSG

Nucleotide


Download         Length: 714 bp        

>NTDB_id=92204 OCV49_RS16100 WP_192853260.1 3533085..3533798(+) (comF) [Vibrio lentus strain LMG 21034]
ATGTTATCTGATTGGCTACAAAAACACACACCACGGCTGGTCACACCTCAATGTCACCTGTGTAAATTGGATAAATCCCC
CAATGATGCTCATCCGCGATGGTGTAATGATTGTCTTAATCTCTTCGAGCCAGTGCCGCGCTGTCAGCGGTGTGGCTTAA
AAACTCTCACTACCGTCGAACAATGTGGTCAGTGTTTATCTAAACCTCCACCGTGGCATCGTCTTTATTGTGTGGGCGAT
TACACCTTCCCAACCGCGCGCTATATTCAGCAGATGAAGTATTCCGATAAGTTTTGGTTTGCTCGCGATCTGTCGAAGTT
GTTAGCCTCACGCATTGACCATCCAGCCCCGCTGATTGCCAGCGTCCCTTTACATTGGACTCGATACATTCAACGCAGCT
TTAACCAAAGCCAGTTATTGGCGAACTATACCGCTCAAGAATTAGGAGTGAAAAGTGATGTATTGTTTCGGCGAAATCGC
GCCACGCTTTCTCAACAAGGGTTAACCAAATCTATAAGGTTGCGTAACCTGAACGGAGCTTTCACGCTTCTTCACCGCGA
CTTTGAAGCGACTGATTATCCTCATATTGCAATAATTGATGATGTTGTAACCACAGGCAGTACAGTGTATCAATTATGCC
AATTACTACTTGAAGTGGGCGTGAAAAGGATTGATATTTACTGTATCTGCCGCACTCCTGAGCCCTCTGGATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

56.356

99.578

0.561
  comF Vibrio campbellii strain DS40M4

47.347

100

0.489

Multiple sequence alignment